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1 ## Process this file with automake to produce Makefile.in
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2
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3 if LOCALLINK
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4 INCLUDES = -I../include -I../../../nucleus -I../../../ajax/pcre \
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5 -I../../../ajax/expat -I../../../ajax/zlib \
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6 -I../../../ajax/core -I../../../ajax/graphics \
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7 -I../../../ajax/ensembl -I../../../ajax/ajaxdb \
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8 -I../../../ajax/acd -I../../../plplot -I../gsoap
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9 else
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10 INCLUDES = -I../include -I${embprefix}/include -I${embprefix}/include/eplplot -I${embprefix}/include/epcre -I${embprefix}/include/ezlib -I../gsoap
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11 endif
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12
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13 if ISSHARED
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14 if ISAIXIA64
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15 if LOCALLINK
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16 AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L../../../plplot/.libs \
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17 -L../../../ajax/pcre/.libs -L../../../ajax/expat/.libs \
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18 -L../../../ajax/zlib/.libs -L../../../ajax/core/.libs \
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19 -L../../../ajax/graphics/.libs -L../../../ajax/ensembl/.libs \
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20 -L../../../ajax/ajaxdb/.libs -L../../../ajax/acd/.libs \
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21 -L../../../nucleus/.libs \
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22 -lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre \
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23 -lezlib -leplplot
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24 else
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25 AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L${embprefix}/lib -lnucleus -lacd \
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26 -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre -lezlib -leplplot
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27 endif
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28 endif
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29 endif
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30
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31 AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) $(DEVWARN_CFLAGS)
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32
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33 ## To add programs
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34 ## Add the program binary name to bin_PROGRAMS
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35 ## (using \ as a continuation character for multiple lines)
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36 ##
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37 ## And add a programname_SOURCES line to define the source files
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38 ## to be compiled and linked
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39 ##
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40 ## make will compile and link the program
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41 ## make install will copy the program to the install directory
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42
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43 bin_PROGRAMS = genret \
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44 gaaui\
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45 gaminoinfo\
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46 gb1\
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47 gb2\
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48 gbasecounter\
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49 gbaseentropy\
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50 gbaseinformationcontent\
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51 gbaserelativeentropy\
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52 gbasezvalue\
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53 gbui\
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54 gcai\
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55 gcbi\
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56 gcgr\
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57 gcircularmap\
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58 gcodoncompiler\
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59 gconsensusz\
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60 gdeltaenc\
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61 gdeltagcskew\
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62 gdinuc\
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63 gdistincc\
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64 gdnawalk\
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65 genc\
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66 gentrez\
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67 gew\
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68 gfindoriter\
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69 gfop\
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70 ggcsi\
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71 ggcskew\
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72 ggcwin\
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73 ggeneskew\
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74 ggenomicskew\
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75 ggenomemap3\
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76 gicdi\
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77 gkmertable\
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78 gldabias\
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79 gnucleotideperiodicity\
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80 goligomercounter\
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81 goligomersearch\
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82 gp2\
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83 gpalindrome\
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84 gphx\
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85 gqueryarm\
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86 gquerystrand\
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87 greporiter\
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88 gsvalue\
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89 gscs\
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90 gseq2png\
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91 gseqinfo\
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92 gshuffleseq\
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93 gsignature\
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94 gviewcds\
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95 gwvalue
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96
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97 genret_SOURCES = genret.c
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98 gaaui_SOURCES = gaaui.c
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99 gaminoinfo_SOURCES = gaminoinfo.c
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100 gb1_SOURCES = gb1.c
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101 gb2_SOURCES = gb2.c
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102 gbasecounter_SOURCES = gbasecounter.c
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103 gbaseentropy_SOURCES = gbaseentropy.c
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104 gbaseinformationcontent_SOURCES = gbaseinformationcontent.c
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105 gbaserelativeentropy_SOURCES = gbaserelativeentropy.c
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106 gbasezvalue_SOURCES = gbasezvalue.c
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107 gbui_SOURCES = gbui.c
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108 gcai_SOURCES = gcai.c
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109 gcbi_SOURCES = gcbi.c
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110 gcgr_SOURCES = gcgr.c
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111 gcircularmap_SOURCES = gcircularmap.c
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112 gcodoncompiler_SOURCES = gcodoncompiler.c
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113 gconsensusz_SOURCES = gconsensusz.c
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114 gdeltaenc_SOURCES = gdeltaenc.c
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115 gdeltagcskew_SOURCES = gdeltagcskew.c
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116 gdistincc_SOURCES = gdistincc.c
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117 gdinuc_SOURCES = gdinuc.c
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118 gdnawalk_SOURCES = gdnawalk.c
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119 genc_SOURCES = genc.c
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120 gentrez_SOURCES = gentrez.c
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121 gew_SOURCES = gew.c
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122 gfindoriter_SOURCES = gfindoriter.c
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123 gfop_SOURCES = gfop.c
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124 ggcsi_SOURCES = ggcsi.c
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125 ggcwin_SOURCES = ggcwin.c
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126 ggeneskew_SOURCES = ggeneskew.c
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127 ggenomicskew_SOURCES = ggenomicskew.c
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128 ggenomemap3_SOURCES = ggenomemap3.c
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129 gicdi_SOURCES = gicdi.c
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130 gkmertable_SOURCES = gkmertable.c
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131 gldabias_SOURCES = gldabias.c
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132 gnucleotideperiodicity_SOURCES = gnucleotideperiodicity.c
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133 goligomercounter_SOURCES = goligomercounter.c
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134 goligomersearch_SOURCES = goligomersearch.c
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135 gp2_SOURCES = gp2.c
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136 gpalindrome_SOURCES = gpalindrome.c
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137 gphx_SOURCES = gphx.c
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138 gqueryarm_SOURCES = gqueryarm.c
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139 gquerystrand_SOURCES = gquerystrand.c
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140 greporiter_SOURCES = greporiter.c
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141 gsvalue_SOURCES = gsvalue.c
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142 gscs_SOURCES = gscs.c
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143 gseq2png_SOURCES = gseq2png.c
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144 gseqinfo_SOURCES = gseqinfo.c
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145 gshuffleseq_SOURCES = gshuffleseq.c
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146 gsignature_SOURCES = gsignature.c
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147 gviewcds_SOURCES = gviewcds.c
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148 gwvalue_SOURCES = gwvalue.c
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149
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150 if LOCALLINK
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151 LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \
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152 ../../../ajax/ajaxdb/libajaxdb.la \
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153 ../../../ajax/ensembl/libensembl.la \
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154 ../../../ajax/graphics/libajaxg.la \
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155 ../../../ajax/core/libajax.la \
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156 ../../../ajax/zlib/libezlib.la \
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157 ../../../ajax/expat/libeexpat.la \
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158 ../../../ajax/pcre/libepcre.la \
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159 ../../../plplot/libeplplot.la \
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160 $(XLIB)
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161 else
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162 LDADD = -L${embprefix}/lib -L../include -lnucleus -lacd -lajaxdb -lensembl \
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163 -lajaxg -lajax -leexpat -lepcre -lezlib -leplplot $(XLIB)
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164 endif
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