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1 /******************************************************************************
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2 ** @source gshuffleseq
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3 **
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4 ** Create randomized sequence with conserved k-mer composition
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5 **
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6 ** @author Copyright (C) 2012 Hidetoshi Itaya
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7 ** @version 1.0.3
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8 ** @modified 2012/1/20 Hidetoshi Itaya Created!
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9 ** @modified 2013/6/16 Revision 1
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10 ** @modified 2015/2/7 RESTify
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11 ** @modified 2015/2/7 Refactor
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12 ** @@
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13 **
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14 ** This program is free software; you can redistribute it and/or
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15 ** modify it under the terms of the GNU General Public License
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16 ** as published by the Free Software Foundation; either version 2
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17 ** of the License, or (at your option) any later version.
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18 **
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19 ** This program is distributed in the hope that it will be useful,
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20 ** but WITHOUT ANY WARRANTY; without even the implied warranty of
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21 ** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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22 ** GNU General Public License for more details.
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23 **
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24 ** You should have received a copy of the GNU General Public License
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25 ** along with this program; if not, write to the Free Software
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26 ** Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
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27 ******************************************************************************/
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28
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29 #include "emboss.h"
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30 #include "soapH.h"
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31 #include "GLANGSoapBinding.nsmap"
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32 #include "soapClient.c"
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33 #include "soapC.c"
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34 #include "../gsoap/stdsoap2.c"
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35 #include "glibs.h"
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36
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37
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38
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39
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40 /* @prog gshuffleseq **********************************************************
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41 **
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42 ** Create randomized sequence with conserved k-mer composition
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43 **
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44 ******************************************************************************/
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45
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46 int main(int argc, char *argv[])
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47 {
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48 embInitPV("gshuffleseq", argc, argv, "GEMBASSY", "1.0.3");
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49
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50 struct soap soap;
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51 struct ns1__shuffleseqInputParams params;
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52
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53 AjPSeqall seqall;
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54 AjPSeqout seqout;
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55 AjPSeq seq;
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56 AjPStr inseq = NULL;
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57 ajint k = 0;
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58
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59 char *in0;
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60 char *result;
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61
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62 seqall = ajAcdGetSeqall("sequence");
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63 k = ajAcdGetInt("k");
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64 seqout = ajAcdGetSeqout("outseq");
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65
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66 params.k = k;
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67
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68 while(ajSeqallNext(seqall, &seq))
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69 {
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70
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71 soap_init(&soap);
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72
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73 inseq = NULL;
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74
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75 ajStrAppendS(&inseq, ajSeqGetSeqS(seq));
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76
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77 in0 = ajCharNewS(inseq);
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78
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79 if(soap_call_ns1__shuffleseq(
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80 &soap,
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81 NULL,
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82 NULL,
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83 in0,
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84 ¶ms,
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85 &result
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86 ) == SOAP_OK)
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87 {
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88 ajCharFmtUpper(result);
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89 ajSeqAssignSeqC(seq, result);
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90 ajSeqoutWriteSeq(seqout, seq);
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91 }
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92 else
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93 {
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94 soap_print_fault(&soap, stderr);
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95 }
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96
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97 soap_destroy(&soap);
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98 soap_end(&soap);
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99 soap_done(&soap);
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100
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101 AJFREE(in0);
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102
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103 ajStrDel(&inseq);
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104 }
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105
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106 ajSeqoutClose(seqout);
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107 ajSeqoutDel(&seqout);
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108 ajSeqallDel(&seqall);
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109 ajSeqDel(&seq);
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110
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111 embExit();
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112
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113 return 0;
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114 }
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