comparison GEMBASSY-1.0.3/acd/gfindoriter.acd @ 0:8300eb051bea draft

Initial upload
author ktnyt
date Fri, 26 Jun 2015 05:19:29 -0400
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-1:000000000000 0:8300eb051bea
1 application: gfindoriter [
2 documentation: "Predicts the replication origin and terminus in bacterial genomes"
3 groups: "Nucleic:Composition"
4 embassy: "gembassy"
5 relations: "EDAM_topic:3073 Nucleic acid feature detection"
6 relations: "EDAM_operation:0415 Nucleic acid feature prediction"
7 ]
8
9 section: input [
10 information: "Input section"
11 type: "page"
12 ]
13
14 seqall: sequence [
15 parameter: "Y"
16 type: "nucleotide"
17 features: "Y"
18 relations: "EDAM_data:0849 Sequence record"
19 ]
20
21 endsection: input
22
23 section: advanced [
24 information: "Advanced section"
25 type: "page"
26 ]
27
28 integer: window [
29 information: "Number of windows to use for Fat Fourier Transform. Only active when -lowpass option is specified. Value must be the power of two"
30 default: "4096"
31 ]
32
33 boolean: purine [
34 information: "Use purine skew for calculation"
35 default: "N"
36 ]
37
38 boolean: keto [
39 information: "Use keto skew for calculation"
40 default: "N"
41 ]
42
43 integer: lowpass [
44 information: "Lowpass filter strength in percent. Typically 95 or 99 works best"
45 default: ""
46 ]
47
48 endsection: advanced
49
50 section: output [
51 information: "Output section"
52 type: "page"
53 ]
54
55 outfile: outfile [
56 parameter: "Y"
57 relations: "EDAM_data:3127 Nucleic acid features (replication and
58 recombination)"
59 ]
60
61 endsection: output