comparison glang-galaxy-conf/kbws/kglimmer.xml @ 2:8947fca5f715 draft default tip

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2:8947fca5f715

<tool id="EMBOSS: kglimmer" name="kglimmer" version="1.0.2">
  <description>Finds genes in prokaryotic genomes using Glimmer</description>
  <command>kglimmer -seqall $input1 -topology $topology -gencode $gencode -auto -outfile $out_file1</command>
  <inputs>
  <param format="data" name="input1" type="data">
    <label>Sequence</label>
  </param>
    <param name="topology" size="4" type="text" value="circular">
      <label>Genome topology ('circular' or 'linear')</label>
    </param>
    <param name="gencode" size="4" type="integer" value="11">
      <label>Genetic code. '11': Bacteria or Archaea, '4': Mycoplasma/Spiroplasma</label>
    </param>

  </inputs>
  <outputs>
    <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" />    
  </outputs>
</tool>