comparison GEMBASSY-1.0.3/acd/ggcwin.acd @ 2:8947fca5f715 draft default tip

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1:84a17b3fad1f

application: ggcwin [
  documentation: "Calculates and plots the GC content along the given genome"
  groups: "Nucleic:Composition"
  embassy: "gembassy"
  relations: "EDAM_topic:0157 Sequence composition analysis"
  relations: "EDAM_operation:0377 Sequence composition calculation
              (nucleic acid)"
]

section: input [
  information: "Input section"
  type: "page"
]

  seqall: sequence [
    parameter: "Y"
    type: "nucleotide"
    features: "Y"
    relations: "EDAM_data:0849 Sequence record"
  ]

endsection: input

section: advanced [
  information: "Advanced section"
  type: "page"
]

  integer: window [
    information: "Window size to observe"
    default: "10000"
  ]

  boolean: at [
    information: "Include for observing AT skew instead of GC skew"
    default: "N"
 ]

  boolean: purine [
    information: "Include for observing purine (AG/TC) skew"
    default: "N"
  ]

  boolean: keto [
    information: "Include for observing keto (TG/AC) skew"
    default: "N"
  ]

endsection: advanced

section: output [
  information: "Output section"
  type: "page"
]

  toggle: plot [
    information: "Include to plot result"
    default: "Y"
  ]

  xygraph: graph [
    standard: "$(plot)"
    gtitle: "ggcwin of $(sequence.name)"
  ]

  outfile: outfile [
    standard: "@(!$(plot))"
    nullok: "Y"
    nulldefault: "$(plot)"
    information: "Program compseq output file (optional)"
    knowntype: "compseq output"
    relations: "EDAM_data:3086 Nucleic acid sequence composition"
  ]

endsection: output