comparison GEMBASSY-1.0.3/acd/gpalindrome.acd @ 2:8947fca5f715 draft default tip

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author ktnyt
date Fri, 26 Jun 2015 05:21:44 -0400
parents 84a17b3fad1f
children
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1:84a17b3fad1f 2:8947fca5f715
1 application: gpalindrome [
2 documentation: "Searches palindrome sequences"
3 groups: "Nucleic:Composition"
4 embassy: "gembassy"
5 relations: "EDAM_topic:0157 Sequence composition analysis"
6 relations: "EDAM_operation:0377 Sequence composition calculation
7 (nucleic acid)"
8 ]
9
10 section: input [
11 information: "Input section"
12 type: "page"
13 ]
14
15 seqall: sequence [
16 parameter: "Y"
17 type: "nucleotide"
18 features: "Y"
19 relations: "EDAM_data:0849 Sequence record"
20 ]
21
22 endsection: input
23
24 section: advanced [
25 information: "Advanced section"
26 type: "page"
27 ]
28
29 integer: shortest [
30 information: "Shortest palindrome to search"
31 default: "4"
32 ]
33
34 integer: loop [
35 information: "Longest stem loop to allow"
36 default: "0"
37 ]
38
39 boolean: gtmatch [
40 information: "If 1, allows g-t match"
41 default: "0"
42 ]
43
44 boolean: accid [
45 information: "Include to use sequence accession ID as query"
46 default: "N"
47 ]
48
49 endsection: advanced
50
51 section: output [
52 information: "Output section"
53 type: "page"
54 ]
55
56 outfile: outfile [
57 parameter: "Y"
58 information: "Program compseq output file"
59 knowntype: "compseq output"
60 relations: "EDAM_data:3086 Nucleic acid sequence composition"
61 ]
62
63 endsection: output