diff GEMBASSY-1.0.3/acd/gaaui.acd @ 0:8300eb051bea draft

Initial upload

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GEMBASSY-1.0.3/acd/gaaui.acd	Fri Jun 26 05:19:29 2015 -0400
@@ -0,0 +1,55 @@
+application: gaaui [
+  documentation: "Calculates various indece of amino acid usage"
+  groups: "Protein:Properties"
+  embassy: "gembassy"
+  relations: "EDAM_topic:0613 Peptides and amino acids"
+  relations: "EDAM_operation:0250 Protein property calculation"
+  relations: "EDAM_operation:0398 Protein molecular weight calculation"
+  relations: "EDAM_operation:2574 Protein hydropathy calculation"
+  relations: "EDAM_operation:0401 Protein hydropathy calculation
+              (from sequence)"
+]
+
+section: input [
+  information: "Input section"
+  type: "page"
+]
+
+  seqall: sequence [
+    parameter: "Y"
+    features: "Y"
+    type: "nucleotide"
+    relations: "EDAM_data:0849 Sequence record"
+  ]
+
+endsection: input
+
+section: advanced [
+  information: "Advanced section"
+  type: "page"
+]
+
+  boolean: accid [
+    information: "Include to use sequence accession ID as query"
+    default: "N"
+  ]
+
+endsection: advanced
+
+section: output [
+  information: "Output section"
+  type: "page"
+]
+
+  outfile: outfile [
+    parameter: "Y"
+    information: "AAINDEX entry output file"
+    knowntype: "aaindex data"
+    relations: "EDAM_data:2016 Amino acid property"
+    relations: "EDAM_data:1501 Amino acid index"
+    relations: "EDAM_data:1502 Amino acid index (chemical classes)"
+    relations: "EDAM_data:1506 Amino acid index (hydropathy)"
+    relations: "EDAM_data:1505 Amino acid index (molecular weight)"
+  ]
+
+endsection: output