Mercurial > repos > ktnyt > gembassy
diff GEMBASSY-1.0.3/acd/ggcsi.acd @ 0:8300eb051bea draft
Initial upload
author | ktnyt |
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date | Fri, 26 Jun 2015 05:19:29 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GEMBASSY-1.0.3/acd/ggcsi.acd Fri Jun 26 05:19:29 2015 -0400 @@ -0,0 +1,74 @@ +application: ggcsi [ + documentation: "GC Skew Index: an index for strand-specific mutational bias" + groups: "Nucleic:Composition" + embassy: "gembassy" + relations: "EDAM_topic:0157 Sequence composition analysis" + relations: "EDAM_operation:0377 Sequence composition calculation + (nucleic acid)" +] + +section: input [ + information: "Input section" + type: "page" +] + + seqall: sequence [ + parameter: "Y" + type: "nucleotide" + features: "Y" + relations: "EDAM_data:0849 Sequence record" + ] + +endsection: input + +section: advanced [ + information: "Advanced section" + type: "page" +] + + selection: gcsi [ + information: "GCSI version to use" + values: "1;2" + default: "2" + ] + + integer: window [ + information: "Number of windows. Must be a power of 2" + default: "4096" + ] + + boolean: purine [ + information: "Use purine skew for calculation" + default: "N" + ] + + boolean: keto [ + information: "Use keto skew for calculation" + default: "N" + ] + + boolean: at [ + information: "Use AT skew for calculation" + default: "N" + ] + + boolean: pval [ + information: "Calculate p-value when GCSI version 2 is selected" + default: "N" + ] + +endsection: advanced + +section: output [ + information: "Output section" + type: "page" +] + + outfile: outfile [ + parameter: "Y" + information: "Program compseq output file" + knowntype: "compseq output" + relations: "EDAM_data:3086 Nucleic acid sequence composition" + ] + +endsection: output