diff GEMBASSY-1.0.3/acd/gshuffleseq.acd @ 0:8300eb051bea draft

Initial upload

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GEMBASSY-1.0.3/acd/gshuffleseq.acd	Fri Jun 26 05:19:29 2015 -0400
@@ -0,0 +1,46 @@
+application: gshuffleseq [
+  documentation: "Creates randomized sequence with conserved k-mer composition"
+  groups: "Nucleic:Mutation"
+  embassy: "gembassy"
+  groups: "Nucleic:Mutation, Protein:Mutation"
+  relations: "EDAM_topic:0091 Data handling"
+  relations: "EDAM_topic:0199 Genetic variation"
+  relations: "EDAM_operation:0367 Sequence mutation and randomization"
+]
+
+section: input [
+  information: "Input section"
+  type: "page"
+]
+
+  seqall: sequence [
+    parameter: "Y"
+    type: "any"
+    relations: "EDAM_data:0849 Sequence record"
+  ]
+
+endsection: input
+
+section: advanced [
+  information: "Advanced section"
+  type: "page"
+]
+
+  integer: k [
+    information: "Sequence k-mer to preserve composition"
+    default: "1"
+  ]
+
+endsection: advanced
+
+section: output [
+  information: "Output section"
+  type: "page"
+]
+
+  seqout: outseq [
+    parameter: "Y"
+    relations: "EDAM_data:0849 Sequence record"
+  ]
+
+endsection: output