diff GEMBASSY-1.0.3/acd/gaaui.acd @ 2:8947fca5f715 draft default tip

Uploaded

--- a/GEMBASSY-1.0.3/acd/gaaui.acd	Fri Jun 26 05:20:29 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,55 +0,0 @@
-application: gaaui [
-  documentation: "Calculates various indece of amino acid usage"
-  groups: "Protein:Properties"
-  embassy: "gembassy"
-  relations: "EDAM_topic:0613 Peptides and amino acids"
-  relations: "EDAM_operation:0250 Protein property calculation"
-  relations: "EDAM_operation:0398 Protein molecular weight calculation"
-  relations: "EDAM_operation:2574 Protein hydropathy calculation"
-  relations: "EDAM_operation:0401 Protein hydropathy calculation
-              (from sequence)"
-]
-
-section: input [
-  information: "Input section"
-  type: "page"
-]
-
-  seqall: sequence [
-    parameter: "Y"
-    features: "Y"
-    type: "nucleotide"
-    relations: "EDAM_data:0849 Sequence record"
-  ]
-
-endsection: input
-
-section: advanced [
-  information: "Advanced section"
-  type: "page"
-]
-
-  boolean: accid [
-    information: "Include to use sequence accession ID as query"
-    default: "N"
-  ]
-
-endsection: advanced
-
-section: output [
-  information: "Output section"
-  type: "page"
-]
-
-  outfile: outfile [
-    parameter: "Y"
-    information: "AAINDEX entry output file"
-    knowntype: "aaindex data"
-    relations: "EDAM_data:2016 Amino acid property"
-    relations: "EDAM_data:1501 Amino acid index"
-    relations: "EDAM_data:1502 Amino acid index (chemical classes)"
-    relations: "EDAM_data:1506 Amino acid index (hydropathy)"
-    relations: "EDAM_data:1505 Amino acid index (molecular weight)"
-  ]
-
-endsection: output