diff GEMBASSY-1.0.3/acd/gbui.acd @ 2:8947fca5f715 draft default tip

Uploaded

--- a/GEMBASSY-1.0.3/acd/gbui.acd	Fri Jun 26 05:20:29 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,69 +0,0 @@
-application: gbui [
-  documentation: "Calculates base usage indices for protein-coding sequences"
-  groups: "Nucleic:Codon usage"
-  embassy: "gembassy"
-  relations: "EDAM_topic:0157 Sequence composition analysis"
-  relations: "EDAM_operation:0236 Sequence composition calculation"
-  relations: "EDAM_operation:0377 Sequence composition calculation
-              (nucleic acid)"
-]
-
-section: input [
-  information: "Input section"
-  type: "page"
-]
-
-  seqall: sequence [
-    parameter: "Y"
-    type: "nucleotide"
-    features: "Y"
-    relations: "EDAM_data:0849 Sequence record"
-  ]
-
-endsection: input
-
-section: advanced [
-  information: "Advanced section"
-  type: "page"
-]
-
-  boolean: translate [
-    information: "Include when translating using standard codon table"
-    default: "N"
-  ]
-
-  list: position [
-    information: "Codon position"
-    values: "all: Assess overall base usage of the gene;
-             1: Assess base usage at 1st position of codons;
-             2: Assess base usage at 2nd position of codons;
-             3: Assess base usage at 3rd position of codons"
-    default: "all"
-  ]
-
-  string: delkey [
-    information: "Regular expression to delete key"
-    knowntype: "regular expression"
-    default: "[^ACDEFGHIKLMNPQRSTVWYacgtU]"
-  ]
-
-  boolean: accid [
-    information: "Include to use sequence accession ID as query"
-    default: "N"
-  ]
-
-endsection: advanced
-
-section: output [
-  information: "Output section"
-	type: "page"
-]
-
-  outfile: outfile [
-    parameter: "Y"
-    information: "Program compseq output file"
-    knowntype: "compseq output"
-    relations: "EDAM_data:3086 Nucleic acid sequence composition"
-  ]
-
-endsection: output