diff GEMBASSY-1.0.3/acd/gfindoriter.acd @ 2:8947fca5f715 draft default tip

Uploaded

--- a/GEMBASSY-1.0.3/acd/gfindoriter.acd	Fri Jun 26 05:20:29 2015 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,61 +0,0 @@
-application: gfindoriter [
-  documentation: "Predicts the replication origin and terminus in bacterial genomes"
-  groups: "Nucleic:Composition"
-  embassy: "gembassy"
-  relations: "EDAM_topic:3073 Nucleic acid feature detection"
-  relations: "EDAM_operation:0415 Nucleic acid feature prediction"
-]
-
-section: input [
-  information: "Input section"
-  type: "page"
-]
-
-  seqall: sequence [
-    parameter: "Y"
-    type: "nucleotide"
-    features: "Y"
-    relations: "EDAM_data:0849 Sequence record"
-  ]
-
-endsection: input
-
-section: advanced [
-  information: "Advanced section"
-  type: "page"
-]
-
-  integer: window [
-    information: "Number of windows to use for Fat Fourier Transform. Only active when -lowpass option is specified. Value must be the power of two"
-    default: "4096"
-  ]
-
-  boolean: purine [
-    information: "Use purine skew for calculation"
-    default: "N"
-  ]
-
-  boolean: keto [
-    information: "Use keto skew for calculation"
-    default: "N"
-  ]
-
-  integer: lowpass [
-    information: "Lowpass filter strength in percent. Typically 95 or 99 works best"
-    default: ""
-  ]
-
-endsection: advanced
-
-section: output [
-  information: "Output section"
-  type: "page"
-]
-
-  outfile: outfile [
-    parameter: "Y"
-    relations: "EDAM_data:3127 Nucleic acid features (replication and
-                recombination)"
-  ]
-
-endsection: output