view GEMBASSY-1.0.3/acd/gpalindrome.acd @ 0:8300eb051bea draft

Initial upload

application: gpalindrome [
  documentation: "Searches palindrome sequences"
  groups: "Nucleic:Composition"
  embassy: "gembassy"
  relations: "EDAM_topic:0157 Sequence composition analysis"
  relations: "EDAM_operation:0377 Sequence composition calculation
              (nucleic acid)"
]

section: input [
  information: "Input section"
  type: "page"
]

  seqall: sequence [
    parameter: "Y"
    type: "nucleotide"
    features: "Y"
    relations: "EDAM_data:0849 Sequence record"
  ]

endsection: input

section: advanced [
  information: "Advanced section"
  type: "page"
]

  integer: shortest [
    information: "Shortest palindrome to search"
    default: "4"
  ]

  integer: loop [
    information: "Longest stem loop to allow"
    default: "0"
  ]

  boolean: gtmatch [
    information: "If 1, allows g-t match"
    default: "0"
  ]

  boolean: accid [
    information: "Include to use sequence accession ID as query"
    default: "N"
  ]

endsection: advanced

section: output [
  information: "Output section"
  type: "page"
]

  outfile: outfile [
    parameter: "Y"
    information: "Program compseq output file"
    knowntype: "compseq output"
    relations: "EDAM_data:3086 Nucleic acid sequence composition"
  ]

endsection: output