view GEMBASSY-1.0.3/acd/ggenomemap3.acd @ 1:84a17b3fad1f draft

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application: ggenomemap3 [
  documentation: "Draws the map of the genome (version 3)"
  groups: "Display"
  embassy: "gembassy"
  relations: "EDAM_topic:0092 Data visualisation"
  relations: "EDAM_topic:0621 Genome, proteome and model organisms"
  relations: "EDAM_operation:0573 Map rendering"
  relations: "EDAM_operation:2466 Map annotation"
]

section: input [
  information: "Input section"
  type: "page"
]

  seqall: sequence [
    parameter: "Y"
    type: "nucleotide"
    features: "Y"
    relations: "EDAM_data:0849 Sequence record"
  ]

  string: format [
    information: "Output file format. Dependent on 'convert' command"
    knowntype: "output format"
    default: "png"
  ]

endsection: input

section: advanced [
  information: "Advanced section"
  type: "page"
]

  integer: width [
    information: "Image width"
    default: "8192"
  ]

  integer: height [
    information: "Image height"
    default: "8192"
  ]

  boolean: accid [
    information: "Include to use sequence accession ID as query"
    default: "N"
  ]

endsection: advanced

section: output [
  information: "Output section"
  type: "page"
]

  string: goutfile [
    information: "Output file for non interactive displays"
    relations: "EDAM_data:1278 Genetic map"
    default: "ggenomemap3"
  ]

endsection: output