Mercurial > repos > ktnyt > gembassy
view glang-galaxy-conf/gembassy/gbasecounter.xml @ 2:8947fca5f715 draft default tip
Uploaded
author | ktnyt |
---|---|
date | Fri, 26 Jun 2015 05:21:44 -0400 |
parents | |
children |
line wrap: on
line source
<tool id="EMBOSS: gbasecounter" name="gbasecounter" version="1.0.2"> <description>Creates a position weight matrix of oligomers around start codon</description> <command>gbasecounter -sequence $input1 -position $position -patlen $patlen -upstream $upstream -downstream $downstream -auto -noaccid -outfile $out_file1</command> <inputs> <param format="data" name="input1" type="data"> <label>Sequence</label> </param> <param name="position" type="select" value="start"> <label>Either 'start' (around start codon) or 'end' (around stop codon) to create the PWM</label> <option value="start">Start</option> <option value="end">End</option> </param> <param name="patlen" size="4" type="integer" value="3"> <label>Length of oligomer to count</label> </param> <param name="upstream" size="4" type="integer" value="30"> <label>Length upstream of specified position to create PWM</label> </param> <param name="downstream" size="4" type="integer" value="30"> <label>Length downstream of specified position to create PWM</label> </param> </inputs> <outputs> <data format="csv" name="out_file1" label="${tool.name} for ${input1.name}" /> </outputs> </tool>