view glang-galaxy-conf/gembassy/gcai.xml @ 2:8947fca5f715 draft default tip

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<tool id="EMBOSS: gcai" name="gcai" version="1.0.2">
  <description>Calculates codon adaptation index for each gene</description>
  <command>gcai -sequence $input1 -translate $translate -wabsent $wabsent -auto -noaccid -outfile $out_file1</command>
  <inputs>
  <param format="data" name="input1" type="data">
    <label>Sequence</label>
  </param>
    <param name="translate" type="select" value="no">
      <label>Include when translating using standard codon table</label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="wabsent" size="4" type="text" value="-1">
      <label>W value of codons absent from a reference set to negative when excludes such codons from the calculation</label>
    </param>

  </inputs>
  <outputs>
    <data format="csv" name="out_file1" label="${tool.name} for ${input1.name}" />    
  </outputs>
</tool>