view glang-galaxy-conf/gembassy/gdeltagcskew.xml @ 2:8947fca5f715 draft default tip

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<tool id="EMBOSS: gdeltagcskew" name="gdeltagcskew" version="1.0.2">
  <description>Calculates strand bias of bacterial genome using delta GC skew index</description>
  <command>gdeltagcskew -sequence $input1 -at $at -purine $purine -keto $keto -method $method -auto -noaccid -outfile $out_file1</command>
  <inputs>
  <param format="data" name="input1" type="data">
    <label>Sequence</label>
  </param>
    <param name="at" type="select" value="no">
      <label>Include when observing AT skew instead of GC skew </label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="purine" type="select" value="no">
      <label>Include when observing purine (AG/TC) skew</label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="keto" type="select" value="no">
      <label>Include when observing keto (TG/AC) skew</label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="method" type="select" value="degenerate">
      <label>Choose the nucleotides to use 'degenerate', 'gc3', or 'all'</label>
      <option value="degenerate">Degenerate</option>
      <option value="gc3">Gc3</option>
      <option value="all">All</option>
    </param>

  </inputs>
  <outputs>
    <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" />    
  </outputs>
</tool>