Mercurial > repos > ktnyt > gembassy
view glang-galaxy-conf/gembassy/gfindoriter.xml @ 2:8947fca5f715 draft default tip
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author | ktnyt |
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date | Fri, 26 Jun 2015 05:21:44 -0400 |
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<tool id="EMBOSS: gfindoriter" name="gfindoriter" version="1.0.2"> <description>Predicts the replication origin and terminus in bacterial genomes</description> <command>gfindoriter -sequence $input1 -window $window -purine $purine -keto $keto -lowpass $lowpass -auto -noaccid -outfile $out_file1</command> <inputs> <param format="data" name="input1" type="data"> <label>Sequence</label> </param> <param name="window" size="4" type="integer" value="4096"> <label>Number of windows to use for Fat Fourier Transform. Only active when -lowpass option is specified. Value must be the power of two</label> </param> <param name="purine" type="select" value="no"> <label>Use purine skew for calculation</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="keto" type="select" value="no"> <label>Use keto skew for calculation</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="lowpass" size="4" type="integer" value="95"> <label>Lowpass filter strength in percent. Typically 95 or 99 works best</label> </param> </inputs> <outputs> <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" /> </outputs> </tool>