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view glang-galaxy-conf/gembassy/ggcsi.xml @ 2:8947fca5f715 draft default tip
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author | ktnyt |
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date | Fri, 26 Jun 2015 05:21:44 -0400 |
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<tool id="EMBOSS: ggcsi" name="ggcsi" version="1.0.2"> <description>GC Skew Index: an index for strand-specific mutational bias</description> <command>ggcsi -sequence $input1 -gcsi $gcsi -window $window -purine $purine -keto $keto -at $at -pval $pval -auto -noaccid -outfile $out_file1</command> <inputs> <param format="data" name="input1" type="data"> <label>Sequence</label> </param> <param name="gcsi" type="select" value="2"> <label>GCSI version to use</label> <option value="1">1</option> <option value="2">2</option> </param> <param name="window" size="4" type="integer" value="4096"> <label>Number of windows. Must be a power of 2</label> </param> <param name="purine" type="select" value="no"> <label>Use purine skew for calculation</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="keto" type="select" value="no"> <label>Use keto skew for calculation</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="at" type="select" value="no"> <label>Use AT skew for calculation</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="pval" type="select" value="no"> <label>Calculate p-value when GCSI version 2 is selected</label> <option value="no">No</option> <option value="yes">Yes</option> </param> </inputs> <outputs> <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" /> </outputs> </tool>