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view glang-galaxy-conf/gembassy/ggcskew_plot.xml @ 2:8947fca5f715 draft default tip
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author | ktnyt |
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date | Fri, 26 Jun 2015 05:21:44 -0400 |
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<tool id="EMBOSS: ggcskew_plot" name="ggcskew_plot" version="1.0.2"> <description>Calculates and plots the GC skew of the input sequence</description> <command interpreter="perl">emboss_single_outputfile_wrapper.pl ggcskew -sequence $input1 -graph png -goutfile $out_file1 -window $window -slide $slide -cumulative $cumulative -at $at -purine $purine -keto $keto -plot -auto</command> <inputs> <param format="data" name="input1" type="data"> <label>Sequences</label> </param> <param name="window" size="4" type="integer" value="10000"> <label>Window size to observe</label> </param> <param name="slide" size="4" type="integer" value="10000"> <label>Window slide size</label> </param> <param name="cumulative" type="select"> <label>Include to calculate cumulative skew</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="at" type="select"> <label>Include for observing AT skew instead of GC skew</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="purine" type="select"> <label>Include for observing purine (AG/TC) skew</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="keto" type="select"> <label>Include for observing keto (TG/AC) skew</label> <option value="no">No</option> <option value="yes">Yes</option> </param> </inputs> <outputs> <data format="png" name="out_file1" /> </outputs> </tool>