Mercurial > repos > ktnyt > gembassy
view glang-galaxy-conf/gembassy/ggcwin.xml @ 2:8947fca5f715 draft default tip
Uploaded
author | ktnyt |
---|---|
date | Fri, 26 Jun 2015 05:21:44 -0400 |
parents | |
children |
line wrap: on
line source
<tool id="EMBOSS: ggcwin" name="ggcwin" version="1.0.2"> <description>Calculates and plots the GC content along the given genome</description> <command interpreter="perl">gembassy_calcandplot_wrapper.pl ggcwin -sequence $input1 -window $window -at $at -purine $purine -keto $keto -auto $out_file1 $out_file2</command> <inputs> <param format="data" name="input1" type="data"> <label>Sequence</label> </param> <param name="window" size="4" type="integer" value="10000"> <label>Window size to observe</label> </param> <param name="at" type="select" value="no"> <label>Include for observing AT skew instead of GC skew</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="purine" type="select" value="no"> <label>Include for observing purine (AG/TC) skew</label> <option value="no">No</option> <option value="yes">Yes</option> </param> <param name="keto" type="select" value="no"> <label>Include for observing keto (TG/AC) skew</label> <option value="no">No</option> <option value="yes">Yes</option> </param> </inputs> <outputs> <data format="csv" name="out_file1" label="${tool.name} data for ${input1.name}" /> <data format="png" name="out_file2" label="${tool.name} plot for ${input1.name}" /> </outputs> </tool>