view glang-galaxy-conf/gembassy/goligomersearch.xml @ 2:8947fca5f715 draft default tip

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<tool id="EMBOSS: goligomersearch" name="goligomersearch" version="1.0.2">
  <description>Searches oligomers in given sequence</description>
  <command>goligomersearch -sequence $input1 -return $return -auto -noaccid -outfile $out_file1</command>
  <inputs>
  <param format="data" name="input1" type="data">
    <label>Sequence</label>
  </param>
    <param name="return" type="select" value="position">
      <label>'position' to return list of positions where oligomers are found, 'oligo' to return list of oligomers found ordered by positions, 'both' to return a hash with positions as keys and oligomers as values, 'distribution' to return four values about the distribution of given oligomer</label>
      <option value="position">Position</option>
      <option value="oligo">Oligo</option>
      <option value="both">Both</option>
      <option value="distribution">Distribution</option>
    </param>

  </inputs>
  <outputs>
    <data format="txt" name="out_file1" label="${tool.name} for ${input1.name}" />    
  </outputs>
</tool>