view glang-galaxy-conf/gembassy/gsignature.xml @ 2:8947fca5f715 draft default tip

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<tool id="EMBOSS: gsignature" name="gsignature" version="1.0.2">
  <description>Calculates oligonucleotide usage (genomic signature)</description>
  <command>gsignature -sequence $input1 -wordlength $wordlength -bothstrand $bothstrand -oe $oe -auto -noaccid -outfile $out_file1</command>
  <inputs>
  <param format="data" name="input1" type="data">
    <label>Sequence</label>
  </param>
    <param name="wordlength" size="4" type="integer" value="2">
      <label>Word length</label>
    </param>
    <param name="bothstrand" type="select" value="yes">
      <label>Include to use both strands direct used otherwise</label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>
    <param name="oe" type="select" value="yes">
      <label>Include to use O/E value observed values used otherwise</label>
      <option value="no">No</option>
      <option value="yes">Yes</option>
    </param>

  </inputs>
  <outputs>
    <data format="csv" name="out_file1" label="${tool.name} for ${input1.name}" />    
  </outputs>
</tool>