view glang-galaxy-conf/gembassy/gviewcds.xml @ 2:8947fca5f715 draft default tip

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<tool id="EMBOSS: gviewcds" name="gviewcds" version="1.0.2">
  <description>Displays a graph of nucleotide contents around start and stop codons</description>
  <command interpreter="perl">gembassy_calcandplot_wrapper.pl gviewcds -sequence $input1 -length $length -gap $gap -auto -noaccid $out_file1 $out_file2</command>
  <inputs>
  <param format="data" name="input1" type="data">
    <label>Sequence</label>
  </param>
    <param name="length" size="4" type="integer" value="100">
      <label>Length in bases to show around start/stop codons</label>
    </param>
    <param name="gap" size="4" type="integer" value="3">
      <label>Gap shown in graph in between start/stop codon neighbors</label>
    </param>

  </inputs>
  <outputs>
    <data format="csv" name="out_file1" label="${tool.name} data for ${input1.name}" />
    <data format="png" name="out_file2" label="${tool.name} plot for ${input1.name}" />    
  </outputs>
</tool>