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oldincludedir = @oldincludedir@
pdfdir = @pdfdir@
prefix = @prefix@
program_transform_name = @program_transform_name@
psdir = @psdir@
sbindir = @sbindir@
sharedstatedir = @sharedstatedir@
srcdir = @srcdir@
sysconfdir = @sysconfdir@
target_alias = @target_alias@
top_build_prefix = @top_build_prefix@
top_builddir = @top_builddir@
top_srcdir = @top_srcdir@
@LOCALLINK_FALSE@INCLUDES = -I../include -I${embprefix}/include -I${embprefix}/include/eplplot -I${embprefix}/include/epcre -I${embprefix}/include/ezlib -I../gsoap
@LOCALLINK_TRUE@INCLUDES = -I../include -I../../../nucleus -I../../../ajax/pcre \
@LOCALLINK_TRUE@	-I../../../ajax/expat -I../../../ajax/zlib \
@LOCALLINK_TRUE@	-I../../../ajax/core -I../../../ajax/graphics \
@LOCALLINK_TRUE@	-I../../../ajax/ensembl -I../../../ajax/ajaxdb \
@LOCALLINK_TRUE@	-I../../../ajax/acd -I../../../plplot -I../gsoap

@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_FALSE@AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L${embprefix}/lib -lnucleus -lacd \
@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_FALSE@-lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre -lezlib -leplplot

@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_TRUE@AIX_CFLAGS = -Wl,-bdynamic -Wl,-brtl -L../../../plplot/.libs \
@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_TRUE@-L../../../ajax/pcre/.libs -L../../../ajax/expat/.libs \
@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_TRUE@-L../../../ajax/zlib/.libs -L../../../ajax/core/.libs \
@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_TRUE@-L../../../ajax/graphics/.libs -L../../../ajax/ensembl/.libs \
@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_TRUE@-L../../../ajax/ajaxdb/.libs -L../../../ajax/acd/.libs \
@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_TRUE@-L../../../nucleus/.libs \
@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_TRUE@-lnucleus -lacd -lajaxdb -lensembl -lajaxg -lajax -leexpat -lepcre \
@ISAIXIA64_TRUE@@ISSHARED_TRUE@@LOCALLINK_TRUE@-lezlib -leplplot

AM_CFLAGS = $(AIX_CFLAGS) $(WARN_CFLAGS) $(DEVWARN_CFLAGS)
genret_SOURCES = genret.c
gaaui_SOURCES = gaaui.c
gaminoinfo_SOURCES = gaminoinfo.c
gb1_SOURCES = gb1.c
gb2_SOURCES = gb2.c
gbasecounter_SOURCES = gbasecounter.c
gbaseentropy_SOURCES = gbaseentropy.c
gbaseinformationcontent_SOURCES = gbaseinformationcontent.c
gbaserelativeentropy_SOURCES = gbaserelativeentropy.c
gbasezvalue_SOURCES = gbasezvalue.c
gbui_SOURCES = gbui.c
gcai_SOURCES = gcai.c
gcbi_SOURCES = gcbi.c
gcgr_SOURCES = gcgr.c
gcircularmap_SOURCES = gcircularmap.c
gcodoncompiler_SOURCES = gcodoncompiler.c
gconsensusz_SOURCES = gconsensusz.c
gdeltaenc_SOURCES = gdeltaenc.c
gdeltagcskew_SOURCES = gdeltagcskew.c
gdistincc_SOURCES = gdistincc.c
gdinuc_SOURCES = gdinuc.c
gdnawalk_SOURCES = gdnawalk.c
genc_SOURCES = genc.c
gentrez_SOURCES = gentrez.c
gew_SOURCES = gew.c
gfindoriter_SOURCES = gfindoriter.c
gfop_SOURCES = gfop.c
ggcsi_SOURCES = ggcsi.c
ggcwin_SOURCES = ggcwin.c
ggeneskew_SOURCES = ggeneskew.c
ggenomicskew_SOURCES = ggenomicskew.c
ggenomemap3_SOURCES = ggenomemap3.c
gicdi_SOURCES = gicdi.c
gkmertable_SOURCES = gkmertable.c
gldabias_SOURCES = gldabias.c
gnucleotideperiodicity_SOURCES = gnucleotideperiodicity.c
goligomercounter_SOURCES = goligomercounter.c
goligomersearch_SOURCES = goligomersearch.c
gp2_SOURCES = gp2.c
gpalindrome_SOURCES = gpalindrome.c
gphx_SOURCES = gphx.c
gqueryarm_SOURCES = gqueryarm.c
gquerystrand_SOURCES = gquerystrand.c
greporiter_SOURCES = greporiter.c
gsvalue_SOURCES = gsvalue.c
gscs_SOURCES = gscs.c
gseq2png_SOURCES = gseq2png.c
gseqinfo_SOURCES = gseqinfo.c
gshuffleseq_SOURCES = gshuffleseq.c
gsignature_SOURCES = gsignature.c
gviewcds_SOURCES = gviewcds.c
gwvalue_SOURCES = gwvalue.c
@LOCALLINK_FALSE@LDADD = -L${embprefix}/lib -L../include -lnucleus -lacd -lajaxdb -lensembl \
@LOCALLINK_FALSE@        -lajaxg -lajax -leexpat -lepcre -lezlib -leplplot $(XLIB)

@LOCALLINK_TRUE@LDADD = ../../../nucleus/libnucleus.la ../../../ajax/acd/libacd.la \
@LOCALLINK_TRUE@	../../../ajax/ajaxdb/libajaxdb.la \
@LOCALLINK_TRUE@	../../../ajax/ensembl/libensembl.la \
@LOCALLINK_TRUE@	../../../ajax/graphics/libajaxg.la \
@LOCALLINK_TRUE@	../../../ajax/core/libajax.la \
@LOCALLINK_TRUE@	../../../ajax/zlib/libezlib.la \
@LOCALLINK_TRUE@	../../../ajax/expat/libeexpat.la \
@LOCALLINK_TRUE@	../../../ajax/pcre/libepcre.la \
@LOCALLINK_TRUE@	../../../plplot/libeplplot.la \
@LOCALLINK_TRUE@        $(XLIB)

all: config.h
	$(MAKE) $(AM_MAKEFLAGS) all-am

.SUFFIXES:
.SUFFIXES: .c .lo .o .obj
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Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
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$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
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$(top_srcdir)/configure:  $(am__configure_deps)
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$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
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$(am__aclocal_m4_deps):

config.h: stamp-h1
	@test -f $@ || rm -f stamp-h1
	@test -f $@ || $(MAKE) $(AM_MAKEFLAGS) stamp-h1

stamp-h1: $(srcdir)/config.h.in $(top_builddir)/config.status
	@rm -f stamp-h1
	cd $(top_builddir) && $(SHELL) ./config.status src/config.h
$(srcdir)/config.h.in:  $(am__configure_deps) 
	($(am__cd) $(top_srcdir) && $(AUTOHEADER))
	rm -f stamp-h1
	touch $@

distclean-hdr:
	-rm -f config.h stamp-h1
install-binPROGRAMS: $(bin_PROGRAMS)
	@$(NORMAL_INSTALL)
	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
	if test -n "$$list"; then \
	  echo " $(MKDIR_P) '$(DESTDIR)$(bindir)'"; \
	  $(MKDIR_P) "$(DESTDIR)$(bindir)" || exit 1; \
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	sed 's/$(EXEEXT)$$//' | \
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uninstall-binPROGRAMS:
	@$(NORMAL_UNINSTALL)
	@list='$(bin_PROGRAMS)'; test -n "$(bindir)" || list=; \
	files=`for p in $$list; do echo "$$p"; done | \
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clean-binPROGRAMS:
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gaaui$(EXEEXT): $(gaaui_OBJECTS) $(gaaui_DEPENDENCIES) $(EXTRA_gaaui_DEPENDENCIES) 
	@rm -f gaaui$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gaaui_OBJECTS) $(gaaui_LDADD) $(LIBS)

gaminoinfo$(EXEEXT): $(gaminoinfo_OBJECTS) $(gaminoinfo_DEPENDENCIES) $(EXTRA_gaminoinfo_DEPENDENCIES) 
	@rm -f gaminoinfo$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gaminoinfo_OBJECTS) $(gaminoinfo_LDADD) $(LIBS)

gb1$(EXEEXT): $(gb1_OBJECTS) $(gb1_DEPENDENCIES) $(EXTRA_gb1_DEPENDENCIES) 
	@rm -f gb1$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gb1_OBJECTS) $(gb1_LDADD) $(LIBS)

gb2$(EXEEXT): $(gb2_OBJECTS) $(gb2_DEPENDENCIES) $(EXTRA_gb2_DEPENDENCIES) 
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gbasecounter$(EXEEXT): $(gbasecounter_OBJECTS) $(gbasecounter_DEPENDENCIES) $(EXTRA_gbasecounter_DEPENDENCIES) 
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gbaseentropy$(EXEEXT): $(gbaseentropy_OBJECTS) $(gbaseentropy_DEPENDENCIES) $(EXTRA_gbaseentropy_DEPENDENCIES) 
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gbaseinformationcontent$(EXEEXT): $(gbaseinformationcontent_OBJECTS) $(gbaseinformationcontent_DEPENDENCIES) $(EXTRA_gbaseinformationcontent_DEPENDENCIES) 
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gbaserelativeentropy$(EXEEXT): $(gbaserelativeentropy_OBJECTS) $(gbaserelativeentropy_DEPENDENCIES) $(EXTRA_gbaserelativeentropy_DEPENDENCIES) 
	@rm -f gbaserelativeentropy$(EXEEXT)
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gbasezvalue$(EXEEXT): $(gbasezvalue_OBJECTS) $(gbasezvalue_DEPENDENCIES) $(EXTRA_gbasezvalue_DEPENDENCIES) 
	@rm -f gbasezvalue$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gbasezvalue_OBJECTS) $(gbasezvalue_LDADD) $(LIBS)

gbui$(EXEEXT): $(gbui_OBJECTS) $(gbui_DEPENDENCIES) $(EXTRA_gbui_DEPENDENCIES) 
	@rm -f gbui$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gbui_OBJECTS) $(gbui_LDADD) $(LIBS)

gcai$(EXEEXT): $(gcai_OBJECTS) $(gcai_DEPENDENCIES) $(EXTRA_gcai_DEPENDENCIES) 
	@rm -f gcai$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gcai_OBJECTS) $(gcai_LDADD) $(LIBS)

gcbi$(EXEEXT): $(gcbi_OBJECTS) $(gcbi_DEPENDENCIES) $(EXTRA_gcbi_DEPENDENCIES) 
	@rm -f gcbi$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gcbi_OBJECTS) $(gcbi_LDADD) $(LIBS)

gcgr$(EXEEXT): $(gcgr_OBJECTS) $(gcgr_DEPENDENCIES) $(EXTRA_gcgr_DEPENDENCIES) 
	@rm -f gcgr$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gcgr_OBJECTS) $(gcgr_LDADD) $(LIBS)

gcircularmap$(EXEEXT): $(gcircularmap_OBJECTS) $(gcircularmap_DEPENDENCIES) $(EXTRA_gcircularmap_DEPENDENCIES) 
	@rm -f gcircularmap$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gcircularmap_OBJECTS) $(gcircularmap_LDADD) $(LIBS)

gcodoncompiler$(EXEEXT): $(gcodoncompiler_OBJECTS) $(gcodoncompiler_DEPENDENCIES) $(EXTRA_gcodoncompiler_DEPENDENCIES) 
	@rm -f gcodoncompiler$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gcodoncompiler_OBJECTS) $(gcodoncompiler_LDADD) $(LIBS)

gconsensusz$(EXEEXT): $(gconsensusz_OBJECTS) $(gconsensusz_DEPENDENCIES) $(EXTRA_gconsensusz_DEPENDENCIES) 
	@rm -f gconsensusz$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gconsensusz_OBJECTS) $(gconsensusz_LDADD) $(LIBS)

gdeltaenc$(EXEEXT): $(gdeltaenc_OBJECTS) $(gdeltaenc_DEPENDENCIES) $(EXTRA_gdeltaenc_DEPENDENCIES) 
	@rm -f gdeltaenc$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gdeltaenc_OBJECTS) $(gdeltaenc_LDADD) $(LIBS)

gdeltagcskew$(EXEEXT): $(gdeltagcskew_OBJECTS) $(gdeltagcskew_DEPENDENCIES) $(EXTRA_gdeltagcskew_DEPENDENCIES) 
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gdinuc$(EXEEXT): $(gdinuc_OBJECTS) $(gdinuc_DEPENDENCIES) $(EXTRA_gdinuc_DEPENDENCIES) 
	@rm -f gdinuc$(EXEEXT)
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gdistincc$(EXEEXT): $(gdistincc_OBJECTS) $(gdistincc_DEPENDENCIES) $(EXTRA_gdistincc_DEPENDENCIES) 
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gdnawalk$(EXEEXT): $(gdnawalk_OBJECTS) $(gdnawalk_DEPENDENCIES) $(EXTRA_gdnawalk_DEPENDENCIES) 
	@rm -f gdnawalk$(EXEEXT)
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genc$(EXEEXT): $(genc_OBJECTS) $(genc_DEPENDENCIES) $(EXTRA_genc_DEPENDENCIES) 
	@rm -f genc$(EXEEXT)
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genret$(EXEEXT): $(genret_OBJECTS) $(genret_DEPENDENCIES) $(EXTRA_genret_DEPENDENCIES) 
	@rm -f genret$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(genret_OBJECTS) $(genret_LDADD) $(LIBS)

gentrez$(EXEEXT): $(gentrez_OBJECTS) $(gentrez_DEPENDENCIES) $(EXTRA_gentrez_DEPENDENCIES) 
	@rm -f gentrez$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gentrez_OBJECTS) $(gentrez_LDADD) $(LIBS)

gew$(EXEEXT): $(gew_OBJECTS) $(gew_DEPENDENCIES) $(EXTRA_gew_DEPENDENCIES) 
	@rm -f gew$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gew_OBJECTS) $(gew_LDADD) $(LIBS)

gfindoriter$(EXEEXT): $(gfindoriter_OBJECTS) $(gfindoriter_DEPENDENCIES) $(EXTRA_gfindoriter_DEPENDENCIES) 
	@rm -f gfindoriter$(EXEEXT)
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gfop$(EXEEXT): $(gfop_OBJECTS) $(gfop_DEPENDENCIES) $(EXTRA_gfop_DEPENDENCIES) 
	@rm -f gfop$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gfop_OBJECTS) $(gfop_LDADD) $(LIBS)

ggcsi$(EXEEXT): $(ggcsi_OBJECTS) $(ggcsi_DEPENDENCIES) $(EXTRA_ggcsi_DEPENDENCIES) 
	@rm -f ggcsi$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(ggcsi_OBJECTS) $(ggcsi_LDADD) $(LIBS)

ggcskew$(EXEEXT): $(ggcskew_OBJECTS) $(ggcskew_DEPENDENCIES) $(EXTRA_ggcskew_DEPENDENCIES) 
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ggcwin$(EXEEXT): $(ggcwin_OBJECTS) $(ggcwin_DEPENDENCIES) $(EXTRA_ggcwin_DEPENDENCIES) 
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ggeneskew$(EXEEXT): $(ggeneskew_OBJECTS) $(ggeneskew_DEPENDENCIES) $(EXTRA_ggeneskew_DEPENDENCIES) 
	@rm -f ggeneskew$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(ggeneskew_OBJECTS) $(ggeneskew_LDADD) $(LIBS)

ggenomemap3$(EXEEXT): $(ggenomemap3_OBJECTS) $(ggenomemap3_DEPENDENCIES) $(EXTRA_ggenomemap3_DEPENDENCIES) 
	@rm -f ggenomemap3$(EXEEXT)
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ggenomicskew$(EXEEXT): $(ggenomicskew_OBJECTS) $(ggenomicskew_DEPENDENCIES) $(EXTRA_ggenomicskew_DEPENDENCIES) 
	@rm -f ggenomicskew$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(ggenomicskew_OBJECTS) $(ggenomicskew_LDADD) $(LIBS)

gicdi$(EXEEXT): $(gicdi_OBJECTS) $(gicdi_DEPENDENCIES) $(EXTRA_gicdi_DEPENDENCIES) 
	@rm -f gicdi$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gicdi_OBJECTS) $(gicdi_LDADD) $(LIBS)

gkmertable$(EXEEXT): $(gkmertable_OBJECTS) $(gkmertable_DEPENDENCIES) $(EXTRA_gkmertable_DEPENDENCIES) 
	@rm -f gkmertable$(EXEEXT)
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gldabias$(EXEEXT): $(gldabias_OBJECTS) $(gldabias_DEPENDENCIES) $(EXTRA_gldabias_DEPENDENCIES) 
	@rm -f gldabias$(EXEEXT)
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gnucleotideperiodicity$(EXEEXT): $(gnucleotideperiodicity_OBJECTS) $(gnucleotideperiodicity_DEPENDENCIES) $(EXTRA_gnucleotideperiodicity_DEPENDENCIES) 
	@rm -f gnucleotideperiodicity$(EXEEXT)
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goligomercounter$(EXEEXT): $(goligomercounter_OBJECTS) $(goligomercounter_DEPENDENCIES) $(EXTRA_goligomercounter_DEPENDENCIES) 
	@rm -f goligomercounter$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(goligomercounter_OBJECTS) $(goligomercounter_LDADD) $(LIBS)

goligomersearch$(EXEEXT): $(goligomersearch_OBJECTS) $(goligomersearch_DEPENDENCIES) $(EXTRA_goligomersearch_DEPENDENCIES) 
	@rm -f goligomersearch$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(goligomersearch_OBJECTS) $(goligomersearch_LDADD) $(LIBS)

gp2$(EXEEXT): $(gp2_OBJECTS) $(gp2_DEPENDENCIES) $(EXTRA_gp2_DEPENDENCIES) 
	@rm -f gp2$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gp2_OBJECTS) $(gp2_LDADD) $(LIBS)

gpalindrome$(EXEEXT): $(gpalindrome_OBJECTS) $(gpalindrome_DEPENDENCIES) $(EXTRA_gpalindrome_DEPENDENCIES) 
	@rm -f gpalindrome$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gpalindrome_OBJECTS) $(gpalindrome_LDADD) $(LIBS)

gphx$(EXEEXT): $(gphx_OBJECTS) $(gphx_DEPENDENCIES) $(EXTRA_gphx_DEPENDENCIES) 
	@rm -f gphx$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gphx_OBJECTS) $(gphx_LDADD) $(LIBS)

gqueryarm$(EXEEXT): $(gqueryarm_OBJECTS) $(gqueryarm_DEPENDENCIES) $(EXTRA_gqueryarm_DEPENDENCIES) 
	@rm -f gqueryarm$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gqueryarm_OBJECTS) $(gqueryarm_LDADD) $(LIBS)

gquerystrand$(EXEEXT): $(gquerystrand_OBJECTS) $(gquerystrand_DEPENDENCIES) $(EXTRA_gquerystrand_DEPENDENCIES) 
	@rm -f gquerystrand$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gquerystrand_OBJECTS) $(gquerystrand_LDADD) $(LIBS)

greporiter$(EXEEXT): $(greporiter_OBJECTS) $(greporiter_DEPENDENCIES) $(EXTRA_greporiter_DEPENDENCIES) 
	@rm -f greporiter$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(greporiter_OBJECTS) $(greporiter_LDADD) $(LIBS)

gscs$(EXEEXT): $(gscs_OBJECTS) $(gscs_DEPENDENCIES) $(EXTRA_gscs_DEPENDENCIES) 
	@rm -f gscs$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gscs_OBJECTS) $(gscs_LDADD) $(LIBS)

gseq2png$(EXEEXT): $(gseq2png_OBJECTS) $(gseq2png_DEPENDENCIES) $(EXTRA_gseq2png_DEPENDENCIES) 
	@rm -f gseq2png$(EXEEXT)
	$(AM_V_CCLD)$(LINK) $(gseq2png_OBJECTS) $(gseq2png_LDADD) $(LIBS)

gseqinfo$(EXEEXT): $(gseqinfo_OBJECTS) $(gseqinfo_DEPENDENCIES) $(EXTRA_gseqinfo_DEPENDENCIES) 
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