Mercurial > repos > kyost > atac_primer_tool
view concatenate_ordered.xml @ 1:038420cc02e3 draft
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author | kyost |
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date | Sat, 28 Apr 2018 19:45:43 -0400 |
parents | fd3ea97a96bc |
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<tool id="concatenate_ordered" name="Concatenate Ordered Dataset Collection" version="0.1.0"> <description> Concatenates files in dataset collection based on orginial file name stored in first column.</description> <requirements> </requirements> <stdio> <exit_code range="1:" /> </stdio> <command><![CDATA[ $__tool_directory__/./concatenate_ordered.bash "$input1" "$output1" ]]></command> <inputs> <param type="data" name="input1" format="tabular" multiple="true" label="Read Counts Files"/> </inputs> <outputs> <data name="output1" format="tabular" label="Read Counts"/> </outputs> <tests> <test> <param name="input1" value="dataset_692.dat,dataset_684.dat,dataset_688.dat,dataset_686.dat,dataset_690.dat"/> <output name="output1" file="read_counts_ordered.txt"/> </test> </tests> <help><![CDATA[ This tools takes a series of input files and concatenates the contents in order according to the alphabetical order of the first column of the input files containing the original file name. ]]></help> <citations> <citation type="doi">doi:10.1038/nmeth.4663</citation> </citations> </tool>