annotate vampire_analysis.xml @ 33:108ad21bc702 draft

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<tool id="vampire_analysis" name="vampire_analysis" version="1.1.0">
    <requirements>
        <requirement type="package" version="2.7.14">python</requirement>
        <requirement type="package" version="0.0.14">vampireingalaxy</requirement>
        <requirement type="package" version="0.22.0">pandas</requirement>
        <requirement type="package" version="1.0.0">scipy</requirement>
        <requirement type="package" version="1.14.5">numpy</requirement>
        <requirement type="package" version="5.1.0">pillow</requirement>
        <requirement type="package" version="2.1.1">matplotlib</requirement>
        <requirement type="package" version="0.19.1">scikit-learn</requirement>
        <requirement type="package" version="3.4.1">opencv</requirement>
        <requirement type="package" version="10.5.4">mesa</requirement>

    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        analysis-run.py -i "${Path_to_the_cell_profiler_default_output_folder}" -o "$output1" -m "$modeling" -n "$cluster_number"
    ]]></command>
    <inputs>
        <param type="text" name="Path_to_the_cell_profiler_default_output_folder"/>
        <param type="boolean" name="modeling" value="True" truevalue="build" falsevalue="apply"/>
        <param type="integer" name="cluster_number" min="1" value="15"/>
    </inputs>
    <outputs>
        <data name="output1" format="csv" />
    </outputs>
    <tests>
        <test>
            <param name="directory" value="direc.txt"/>
            <output name="output1" file="hi.csv"/>
        </test>
    </tests>
    <help><![CDATA[
        No Help is available at this moment.
    ]]></help>
    <citations>
        <citation type="bibtex">
@misc{renameTODO,
  author = {Han, Kyu Sang},
  year = {2018},
  title = {Mr.},
  url = {https://kyusanghan.com},
}</citation>
    </citations>
</tool>