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view mask_sorter.xml @ 11:b9c2f65c4f90 draft

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author kyu
date Wed, 13 Jun 2018 16:05:57 -0400
parents 33ad880d8491
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<tool id="mask_sorter" name="mask_sorter" version="0.1.0">
    <requirements>
        <requirement type="package" version="2.7.14">python</requirement>
        <requirement type="package" version="0.0.11">vampireingalaxy</requirement>
        <requirement type="package" version="0.22.0">pandas</requirement>
        <requirement type="package" version="1.0.0">scipy</requirement>
        <requirement type="package" version="1.14.2">numpy</requirement>
        <requirement type="package" version="5.1.0">pillow</requirement>
        <requirement type="package" version="2.3.0">imageio</requirement>
        
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        sort-run.py -i "${directory}" -o "$output1"
    ]]></command>
    <inputs>
        <param type="text" name="directory"/>
    </inputs>
    <outputs>
        <data name="output1" format="csv" />
    </outputs>
    <tests>
        <test>
            <param name="directory" value="direc.txt"/>
            <output name="output1" file="hi.csv"/>
        </test>
    </tests>
    <help><![CDATA[
        Upload the text file with the path to the folder containing your cell profiler output masks
    ]]></help>
    <citations>
        <citation type="bibtex">
@misc{renameTODO,
  author = {Han, Kyu Sang},
  year = {2018},
  title = {Mr.},
  url = {https://kyusanghan.com},
}</citation>
    </citations>
</tool>