# HG changeset patch # User kyu # Date 1528474110 14400 # Node ID 007d87af8782b36d59a2c70c38fe8205ffe5401e # Parent a689eaa720c20ed6bcbb22fcdd34efe5c5501bfd Uploaded diff -r a689eaa720c2 -r 007d87af8782 mask_sorter.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/mask_sorter.xml Fri Jun 08 12:08:30 2018 -0400 @@ -0,0 +1,37 @@ +<tool id="mask_sorter" name="mask_sorter" version="0.1.0"> + <requirements> + <requirement type="package" version="2.7.14">python</requirement> + <requirement type="package" version="0.22.0">pandas</requirement> + <requirement type="package" version="1.0.0">scipy</requirement> + <requirement type="package" version="1.14.2">numpy</requirement> + <requirement type="package" version="5.1.0">pillow</requirement> + <requirement type="package" version="2.3.0">imageio</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + sort-run.py -i "${directory}" -o "$output1" + ]]></command> + <inputs> + <param type="text" name="directory"/> + </inputs> + <outputs> + <data name="output1" format="csv" /> + </outputs> + <tests> + <test> + <param name="directory" value="direc.txt"/> + <output name="output1" file="hi.csv"/> + </test> + </tests> + <help><![CDATA[ + Upload the text file with the path to the folder containing your cell profiler output masks + ]]></help> + <citations> + <citation type="bibtex"> +@misc{renameTODO, + author = {Han, Kyu Sang}, + year = {2018}, + title = {Mr.}, + url = {https://kyusanghan.com}, +}</citation> + </citations> +</tool>