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changeset 10:33ad880d8491 draft

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Uploaded
author kyu
date Mon, 11 Jun 2018 14:48:16 -0400
parents 47f7ac3defec
children b9c2f65c4f90
files mask_sorter.xml
diffstat 1 files changed, 39 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/mask_sorter.xml	Mon Jun 11 14:48:16 2018 -0400
@@ -0,0 +1,39 @@
+<tool id="mask_sorter" name="mask_sorter" version="0.1.0">
+    <requirements>
+        <requirement type="package" version="2.7.14">python</requirement>
+        <requirement type="package" version="0.0.11">vampireingalaxy</requirement>
+        <requirement type="package" version="0.22.0">pandas</requirement>
+        <requirement type="package" version="1.0.0">scipy</requirement>
+        <requirement type="package" version="1.14.2">numpy</requirement>
+        <requirement type="package" version="5.1.0">pillow</requirement>
+        <requirement type="package" version="2.3.0">imageio</requirement>
+        
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        sort-run.py -i "${directory}" -o "$output1"
+    ]]></command>
+    <inputs>
+        <param type="text" name="directory"/>
+    </inputs>
+    <outputs>
+        <data name="output1" format="csv" />
+    </outputs>
+    <tests>
+        <test>
+            <param name="directory" value="direc.txt"/>
+            <output name="output1" file="hi.csv"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+        Upload the text file with the path to the folder containing your cell profiler output masks
+    ]]></help>
+    <citations>
+        <citation type="bibtex">
+@misc{renameTODO,
+  author = {Han, Kyu Sang},
+  year = {2018},
+  title = {Mr.},
+  url = {https://kyusanghan.com},
+}</citation>
+    </citations>
+</tool>