Mercurial > repos > kyu > vampire
changeset 0:4ba3d5fa9163 draft
Uploaded
| author | kyu |
|---|---|
| date | Mon, 21 May 2018 13:27:10 -0400 |
| parents | |
| children | 20b6070cf44b |
| files | main.xml |
| diffstat | 1 files changed, 41 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/main.xml Mon May 21 13:27:10 2018 -0400 @@ -0,0 +1,41 @@ +<tool id="vampire" name="vampire" version="0.1.0"> + <requirements> + <requirement type="package" version="2.7.14">python</requirement> + <requirement type="package" version="0.22.0">pandas</requirement> + <requirement type="package" version="1.0.0">scipy</requirement> + <requirement type="package" version="1.14.2">numpy</requirement> + <requirement type="package" version="5.1.0">pillow</requirement> + <requirement type="package" version="2.1.1">matplotlib</requirement> + <requirement type="package" version="0.19.1">scikit-learn</requirement> + <requirement type="package" version="3.4.1">opencv</requirement> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + python /opt/galaxy/tools/VampirePackage/sourcecode/command_execute.py -i "${directory}" -o "$output1" -m "$modeling" -n "$cluster_number" + ]]></command> + <inputs> + <param type="text" name="directory"/> + <param type="boolean" name="modeling" value="True" truevalue="build" falsevalue="apply"/> + <param type="integer" name="cluster_number" min="1" value="15"/> + </inputs> + <outputs> + <data name="output1" format="csv" /> + </outputs> + <tests> + <test> + <param name="directory" value="direc.txt"/> + <output name="output1" file="hi.csv"/> + </test> + </tests> + <help><![CDATA[ + Upload the text file with the path to the folder containing your cell profiler output masks + ]]></help> + <citations> + <citation type="bibtex"> +@misc{renameTODO, + author = {Han, Kyu Sang}, + year = {2018}, + title = {Mr.}, + url = {https://kyusanghan.com}, +}</citation> + </citations> +</tool>