diff MClust.xml @ 1:f3fa21cda5f5 draft default tip

planemo upload commit 13e72e84c523bda22bda792bbebf4720d28542d5-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/MClust.xml	Fri Aug 10 15:45:44 2018 -0400
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+<tool id="MClust" name="M-Clust" version="0.1.0">
+    <description>Get Cluster of proteins</description>
+  <command interpreter="Rscript">MClust_all.R -f $input1 -c $input2 -s $Space_String -i $id_column -e $first_experiment -v $outputCSV -d $outputPDF</command>
+  <inputs>
+    <param format="data" name="input1" type="data" label="Proteins file"/>
+    <param format="data" name="input2" type="data" label="Control File"/>
+    <param type="integer" name="id_column" label="Column number of Prptein Id" value="1" min="1" />
+    <param type="integer" name="first_experiment" label="Column number where the experiments start" value="0" min="0" /> 
+    <param type="text" name="Space_String" label="Space String" value="." />
+  </inputs>
+  <outputs>
+    <data format="pdf" name="outputPDF" />
+    <data format="tabular" name="outputCSV" />
+  </outputs>
+
+  <tests>
+    <test>
+      <param name="input1" value="EXP11_paraR_log.txt"/>
+      <param name="input2" value="EXP11_paraR_log_properties_v1"/>
+      <param name="id_column" value="31"/>
+      <param name="first_experiment" value="0"/>
+      <param name="Space_String" value="."/>
+      <output name="outputCSV" file="Clust.csv"/>
+      <output name="outputPDF" file="Clust.pdf"/>
+    </test>
+  </tests>
+
+  <help>
+This tool executes a clustering, after a evaluation with ANOVA, works with data with at least three repetitions.
+  </help>
+
+  <citations>
+    <citation type="bibtex">
+      @misc{Concatenate,
+        author = {Application, Labis},
+        year = 2018,
+        title = M-Clust,
+        publisher = labisapplications
+      }
+    </citation>
+  </citations>
+</tool>
+