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planemo upload commit 523a9c8df173302ad38e9f15e7d82eab01736551-dirty
author lain
date Fri, 03 Mar 2023 14:10:24 +0000
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1 <!doctype HTML>
2 <html lang="en">
3 <head>
4 <meta charset="utf-8">
5 <meta name="viewport" content="width=device-width, initial-scale=1.0">
6 <meta name="author" content="MetaboHUB">
7 <link rel="icon" type="image/ico" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/ico/favicon.ico">
8 <title>PeakForest MetaboHub</title>
9 <meta name="keywords" content="spectral database, mass spectrometry, nmr, lc-ms, gc-ms, chemical, metabolomic, compound, library">
10 <meta name="description" content="PeakForest is a spectral data portal for Metabolomics community. It provides storage and annotation services for metabolic profils of biological matrix. It relies on the wide range of complementary methods using UPLC-(API)HRMS, GC-QToF, and NMR.">
11 <style>.file-input-wrapper { overflow: hidden; position: relative; cursor: pointer; z-index: 1; }.file-input-wrapper input[type=file], .file-input-wrapper input[type=file]:focus, .file-input-wrapper input[type=file]:hover { position: absolute; top: 0; left: 0; cursor: pointer; opacity: 0; filter: alpha(opacity=0); z-index: 99; outline: 0; }.file-input-name { margin-left: 8px; }</style>
12 <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap.min.css" rel="stylesheet">
13 <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/sb-admin.min.css" rel="stylesheet">
14 <link rel="stylesheet" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/font-awesome/css/font-awesome.min.css">
15 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/jquery.min.js"></script>
16 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap.min.js"></script>
17 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap-typeahead.min.js"></script>
18 <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap-select.min.css" media="screen" rel="stylesheet" type="text/css">
19 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap-select.min.js" type="text/javascript"></script>
20 <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap-datepicker.min.css" media="screen" rel="stylesheet" type="text/css">
21 <script type="text/javascript" src="/common.js"></script>
22 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap-datepicker.min.js" type="text/javascript"></script>
23 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/jquery.tmpl.min.js" type="text/javascript"></script>
24 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/highcharts/js/highcharts.min.js"></script>
25 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/highcharts/js/modules/exporting.min.js"></script>
26 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/highcharts/js/themes/grid.min.js"></script>
27 <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap.overwrite.min.css" rel="stylesheet" media="screen">
28 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/peakforest.min.js"></script>
29 <script type="text/javascript" src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/tablesorter/jquery.tablesorter.min.js"></script>
30 <script type="text/javascript" src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/tablesorter/tables.min.js"></script>
31 <link rel="stylesheet" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/nmrpro/specdraw.min.css" type="text/css">
32 <meta name="viewport" content="width=device-width, initial-scale=1">
33 </head>
34 <body>
35 <div id="page-wrapper" class="peakforest-main-wrapper">
36 <div>
37 <button class="btn btn-validate" onclick="ctx().exit()">Close MS2PF</button>
38 </div>
39 <div class="row" style="margin-bottom: 50px;">
40 <div id="add-spectrum">
41 <div class="panel-group" id="accordion-{{ TAB_INDEX_PLACEHOLDER }}">
42 <div class="panel panel-default">
43 <div class="panel-heading panel-success">
44 <h4 class="panel-title">
45 <a
46 data-toggle="collapse"
47 data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}"
48 href="#step0-{{ TAB_INDEX_PLACEHOLDER }}"
49 >
50 Spectrum Type
51 <i
52 id="step0sign-{{ TAB_INDEX_PLACEHOLDER }}"
53 class="fa fa-question-circle"
54 ></i>
55 </a>
56 </h4>
57 </div>
58 <div
59 id="step0-{{ TAB_INDEX_PLACEHOLDER }}"
60 class="panel-collapse collapse in"
61 >
62 <div class="panel-body">
63 <button
64 class="btn btn-disabled"
65 disabled="disabled"><i
66 class="fa fa-plus-circle"
67 ></i> GC-MS spectrum</button>
68 <button
69 id="set_LC_MS_spectrum_button"
70 class="btn btn-primary"
71 onclick="ctx().addOneSpectrum(2);"><i
72 class="fa fa-plus-circle"
73 ></i> LC-MS spectrum</button>
74 <button
75 id="set_LC_MSMS_spectrum_button"
76 class="btn btn-primary"
77 onclick="ctx().addOneSpectrum(5);"><i
78 class="fa fa-plus-circle"
79 ></i> LC-MSMS spectrum</button>
80 </div>
81 </div>
82 </div>
83 <div
84 id="add1spectrum-sampleData-{{ TAB_INDEX_PLACEHOLDER }}"
85 class="panel panel-default"
86 style="display: none;">
87 <div
88 class="panel-heading panel-success">
89 <h4
90 class="panel-title">
91 <a
92 id="linkActivateStep1-{{ TAB_INDEX_PLACEHOLDER }}"
93 data-toggle="collapse"
94 data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}"
95 href="#step1-{{ TAB_INDEX_PLACEHOLDER }}"
96 >
97 Sample Type
98 <i
99 id="step1sign-{{ TAB_INDEX_PLACEHOLDER }}"
100 class="fa fa-question-circle"
101 ></i>
102 </a>
103 </h4>
104 </div>
105 <div
106 id="step1-{{ TAB_INDEX_PLACEHOLDER }}"
107 class="panel-collapse collapse"
108 >
109 <div class="panel-body">
110 <div class="col-lg-12">
111 <div class="col-lg-8">
112 <div class="panel panel-default">
113 <div class="panel-heading">
114 <div class="form-group input-group has-error">
115 <span class="input-group-addon">
116 Sample Type
117 </span>
118 <select
119 id="add1spectrum-sample-type-{{ TAB_INDEX_PLACEHOLDER }}"
120 class="form-control add1spectrum add1spectrum-sampleForm is-mandatory">
121 <option
122 value=""
123 selected="selected"
124 disabled="disabled">choose in list…</option>
125 <option value="compound-mix">
126 Mix of Ref. Chemical Compound
127 </option>
128 </select>
129 </div>
130 </div>
131 <div class="panel-body">
132 <div
133 id="add1spectrum-sample-type-compound-mix-{{ TAB_INDEX_PLACEHOLDER }}"
134 class="add1spectrum-sample-type-panel"
135 style="display:none;">
136 <div class="form-group input-group has-warning">
137 <span class="input-group-addon">solvent</span>
138 <select
139 id="add1spectrum-sample-mixSolvent-{{ TAB_INDEX_PLACEHOLDER }}"
140 class="form-control add1spectrum add1spectrum-sampleForm is-optional"
141 >
142 <option value="" selected="selected" disabled="disabled">choose in list…</option>
143 <option value="H2O/ethanol (75/25)">H2O/ethanol (75/25)</option>
144 </select>
145 </div>
146 </div>
147 <div
148 id="add1spectrum-sample-type-rcc-added-{{ TAB_INDEX_PLACEHOLDER }}"
149 class="panel panel-default add1spectrum-sample-type-panel"
150 style="display:none"
151 >
152 <div class="panel-heading">
153 <h3 class="panel-title">Reference compound added</h3>
154 </div>
155 <div class="panel-body" style="padding: 0px;">
156 <div
157 id="container_RCC_ADDED-{{ TAB_INDEX_PLACEHOLDER }}"
158 class="handsontable"
159 ></div>
160 </div>
161 </div>
162 </div>
163 </div>
164 </div>
165 <div class="col-lg-4">
166 <div id="sample-bonus-display-{{ TAB_INDEX_PLACEHOLDER }}"></div>
167 &nbsp;
168 </div>
169 </div>
170 <div class="col-lg-12">
171 <div class="col-lg-8">
172 <br>
173 <button
174 id="btnSwitch-gotoStep2-{{ TAB_INDEX_PLACEHOLDER }}"
175 onclick="ctx().switchToStep(2)"
176 class="btn btn-disabled switchStep"
177 disabled=""
178 >
179 <i class="fa fa-arrow-circle-down"></i> Next!
180 </button>
181 </div>
182 <div class="col-lg-4">&nbsp;</div>
183 </div>
184 </div>
185 </div>
186 </div>
187 <div
188 id="add1spectrum-chromatographyData-LC-{{ TAB_INDEX_PLACEHOLDER }}"
189 class="panel panel-default"
190 style="display: none;"
191 >
192 <div class="panel-heading panel-success">
193 <h4 class="panel-title">
194 <a
195 id="linkActivateStep2-lc-{{ TAB_INDEX_PLACEHOLDER }}"
196 data-toggle="collapse"
197 data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}"
198 href="#step2-lc-{{ TAB_INDEX_PLACEHOLDER }}"
199 >
200 Liquid Chromatography
201 <i
202 id="step2-lc-sign-{{ TAB_INDEX_PLACEHOLDER }}"
203 class="fa fa-question-circle"
204 ></i>
205 </a>
206 </h4>
207 </div>
208 <div
209 id="step2-lc-{{ TAB_INDEX_PLACEHOLDER }}"
210 class="panel-collapse collapse"
211 >
212 <div class="panel-body">
213 <div class="col-lg-12">
214 <div class="col-lg-6">
215 <div class="panel panel-default">
216 <div class="panel-heading">
217 <h3 class="panel-title">Chromatography Param.</h3>
218 </div>
219 <div class="panel-body">
220 <div class="form-group input-group has-error">
221 <span class="input-group-addon">Method</span>
222 <select
223 id="add1spectrum-chromatoLC-method-{{ TAB_INDEX_PLACEHOLDER }}"
224 class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory"
225 ></select>
226 </div>
227 <div id="alertBoxSelectTemplate-{{ TAB_INDEX_PLACEHOLDER }}"></div>
228 <div class="form-group input-group has-error">
229 <span class="input-group-addon">Column constructor</span>
230 <select
231 id="add1spectrum-chromatoLC-colConstructor-{{ TAB_INDEX_PLACEHOLDER }}"
232 class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory"
233 >
234 <option value="" selected="selected" disabled="disabled">choose in list…</option>
235 <!--
236 <option value="Agilent">Agilent</option>
237 <option value="alltech">Alltech</option>
238 <option value="CIL cluzeau">Cil cluzeau</option>
239 <option value="Daicel">Daicel</option>
240 <option value="Hypersil">Hypersil</option>
241 <option value="Interchim">Interchim</option>
242 <option value="Macherey nagel">Macherey nagel</option>
243 <option value="Merck">Merck</option>
244 <option value="Phenomenex">Phenomenex</option>
245 <option value="Shiseido">Shiseido</option>
246 <option value="Supelco (sigma-aldrich)">Supelco (sigma-aldrich)</option>
247 <option value="Thermo">Thermo</option>
248 <option value="Vydac">Vydac</option>
249 <option value="Waters">Waters</option>
250 <option value="YMC">YMC</option>
251 <option value="other">Other</option>
252 -->
253 </select>
254 </div>
255 <div class="form-group input-group ">
256 <span class="input-group-addon">Column constructor (other)</span>
257 <input id="add1spectrum-chromatoLC-colConstructorOther-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm" disabled="disabled" placeholder="e.g. HAL 9000">
258 </div>
259 <div class="form-group input-group has-warning">
260 <span class="input-group-addon">Column name</span>
261 <input id="add1spectrum-chromatoLC-colName-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. UPLC HSS T3">
262 </div>
263 <div class="form-group input-group has-error">
264 <span class="input-group-addon">Column length (mm)</span>
265 <input id="add1spectrum-chromatoLC-colLength-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" placeholder="e.g. 150">
266 </div>
267 <div class="form-group input-group has-error">
268 <span class="input-group-addon">Column diameter (mm)</span>
269 <input id="add1spectrum-chromatoLC-colDiameter-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" placeholder="e.g. 2.1">
270 </div>
271 <div class="form-group input-group has-error">
272 <span class="input-group-addon">Particule size (µm)</span>
273 <input id="add1spectrum-chromatoLC-colParticuleSize-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" placeholder="e.g. 1.8">
274 </div>
275 <div class="form-group input-group has-warning">
276 <span class="input-group-addon">Column temperature (°C)</span>
277 <input id="add1spectrum-chromatoLC-colTemperature-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 30">
278 </div>
279 <div class="form-group input-group has-error">
280 <span class="input-group-addon">LC mode</span>
281 <select id="add1spectrum-chromatoLC-LCMode-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory">
282 <option value="" selected="selected" disabled="disabled">choose in list…</option>
283 <option value="Gradient">Gradient</option>
284 <option value="Isocratic">Isocratic</option>
285 </select>
286 </div>
287 <div class="form-group input-group has-warning">
288 <span class="input-group-addon">Separation flow rate (µL/min)</span>
289 <input id="add1spectrum-chromatoLC-separationFlowRate-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 400">
290 </div>
291 <div class="form-group input-group has-error">
292 <span class="input-group-addon">Separation solvent A</span>
293 <select
294 id="add1spectrum-chromatoLC-separationSolvA-{{ TAB_INDEX_PLACEHOLDER }}"
295 class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory"
296 >
297 <option value="" selected="selected" disabled="disabled">choose in list…</option>
298 <!--
299 <option value="5% ACN + 0.1% FA in H2O">5% ACN + 0.1% FA in H2O</option>
300 <option value="10% ACN + 0.1% FA in H2O">10% ACN + 0.1% FA in H2O</option>
301 <option value="10mM (NH4)2CO3 / ACN (20/80) (v/v)">10mM (NH4)2CO3 / ACN (20/80) (v/v)</option>
302 <option value="Acetonitrile">Acetonitrile</option>
303 <option value="Acetonitrile + 0.1% Formic Acid">Acetonitrile + 0.1% Formic Acid</option>
304 <option value="H2O + 0.1% Formic Acid">H2O + 0.1% Formic Acid</option>
305 <option value="H2O, ammonium carbonate 10 mM, pH10.5">H2O, ammonium carbonate 10 mM, pH10.5</option>
306 <option value="H2O, ammonium acetate 2.5 mM">H2O, ammonium acetate 2.5 mM</option>
307 <option value="H2O / CH3OH / CH3CO2H (95/5/0.1)">H2O / CH3OH / CH3CO2H (95/5/0.1)</option>
308 <option value="Methanol">Methanol</option>
309 <option value="Methanol / H2O (1/1)">Methanol / H2O (1/1)</option>
310 <option value="Methanol / H2O (1/1), 0.1% FA">Methanol / H2O (1/1), 0.1% FA</option>
311 <option value="Methanol / CH3CO2H (100/0.1)">Methanol / CH3CO2H (100/0.1)</option>
312 <option value="Methanol / ACN (60/40) ammonium acetate 2.5 mM">Methanol / ACN (60/40) ammonium acetate 2.5 mM</option>
313 -->
314 </select>
315 </div>
316 <div class="form-group input-group has-warning">
317 <span class="input-group-addon">pH solvent A (if acqueous solvant)</span>
318 <input id="add1spectrum-chromatoLC-separationSolvApH-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 7.0">
319 </div>
320 <div class="form-group input-group has-error">
321 <span class="input-group-addon">Separation solvent B</span>
322 <select
323 id="add1spectrum-chromatoLC-separationSolvB-{{ TAB_INDEX_PLACEHOLDER }}"
324 class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory"
325 >
326 <!--
327 <option value="" selected="selected" disabled="disabled">choose in list…</option>
328 <option value="5% ACN + 0.1% FA in H2O">5% ACN + 0.1% FA in H2O</option>
329 <option value="10% ACN + 0.1% FA in H2O">10% ACN + 0.1% FA in H2O</option>
330 <option value="10mM (NH4)2CO3 / ACN (20/80) (v/v)">10mM (NH4)2CO3 / ACN (20/80) (v/v)</option>
331 <option value="Acetonitrile">Acetonitrile</option>
332 <option value="Acetonitrile + 0.1% Formic Acid">Acetonitrile + 0.1% Formic Acid</option>
333 <option value="H2O + 0.1% Formic Acid">H2O + 0.1% Formic Acid</option>
334 <option value="H2O, ammonium carbonate 10 mM, pH10.5">H2O, ammonium carbonate 10 mM, pH10.5</option>
335 <option value="H2O, ammonium acetate 2.5 mM">H2O, ammonium acetate 2.5 mM</option>
336 <option value="H2O / CH3OH / CH3CO2H (95/5/0.1)">H2O / CH3OH / CH3CO2H (95/5/0.1)</option>
337 <option value="Methanol">Methanol</option>
338 <option value="Methanol / H2O (1/1)">Methanol / H2O (1/1)</option>
339 <option value="Methanol / H2O (1/1), 0.1% FA">Methanol / H2O (1/1), 0.1% FA</option>
340 <option value="Methanol / CH3CO2H (100/0.1)">Methanol / CH3CO2H (100/0.1)</option>
341 <option value="Methanol / ACN (60/40) ammonium acetate 2.5 mM">Methanol / ACN (60/40) ammonium acetate 2.5 mM</option>
342 -->
343 </select>
344 </div>
345 <div class="form-group input-group has-warning">
346 <span class="input-group-addon">pH solvent B (if acqueous solvant)</span>
347 <input id="add1spectrum-chromatoLC-separationSolvBApH-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 7.0">
348 </div>
349 </div>
350 </div>
351 </div>
352 <div class="col-lg-6">
353 <div class="panel panel-default">
354 <div class="panel-heading">
355 <h3 class="panel-title">Separation flow gradient</h3>
356 </div>
357 <div class="panel-body" style="padding: 0px;">
358 <div id="container_LC_SFG-{{ TAB_INDEX_PLACEHOLDER }}" class="handsontable"></div>
359 </div>
360 </div>
361 </div>
362 </div>
363 <div class="col-lg-12">
364 <div class="col-lg-8">
365 <br>
366 <button id="btnSwitch-gotoStep3-lc-{{ TAB_INDEX_PLACEHOLDER }}" onclick="ctx().switchToStep(3);" class="btn btn-disabled switchStep" disabled=""><i class="fa fa-arrow-circle-down"></i> Next!</button>
367 </div>
368 <div class="col-lg-4">&nbsp;</div>
369 </div>
370 </div>
371 </div>
372 </div>
373 <div id="add1spectrum-chromatographyData-GC-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default" style="display: none;">
374 <div class="panel-heading panel-success">
375 <h4 class="panel-title">
376 <a id="linkActivateStep2-gc-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step2-gc-{{ TAB_INDEX_PLACEHOLDER }}">
377 Gaz Chromatography <i id="step2-gc-sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle"></i>
378 </a>
379 </h4>
380 </div>
381 <div id="step2-gc-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse">
382 <div class="panel-body">
383 <div class="col-lg-12">
384 <div class="col-lg-6">
385 i &lt;3 GC
386 </div>
387 <div class="col-lg-6">&nbsp;</div>
388 </div>
389 <div class="col-lg-12">
390 <div class="col-lg-8">
391 <br>
392 <button id="btnSwitch-gotoStep3-gc-{{ TAB_INDEX_PLACEHOLDER }}" onclick="ctx().switchToStep(3);" class="btn btn-disabled switchStep" disabled=""><i class="fa fa-arrow-circle-down"></i> Next!</button>
393 </div>
394 <div class="col-lg-4">&nbsp;</div>
395 </div>
396 </div>
397 </div>
398 </div>
399 <div id="add1spectrum-analyserData-MS-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default" style="display: none;">
400 <div class="panel-heading panel-success">
401 <h4 class="panel-title">
402 <a id="linkActivateStep3-ms-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step3-ms-{{ TAB_INDEX_PLACEHOLDER }}">
403 MS Analyzer <i id="step3-ms-sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle"></i>
404 </a>
405 </h4>
406 </div>
407 <div id="step3-ms-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse">
408 <div class="panel-body">
409 <div class="col-lg-12">
410 <div class="col-lg-6">
411 <br>
412 <div class="panel panel-default">
413 <div class="panel-heading">
414 <h3 class="panel-title">Analyzer</h3>
415 </div>
416 <div class="panel-body">
417 <div class="form-group input-group has-error">
418 <span class="input-group-addon">Instrument</span>
419 <input id="add1spectrum-analyzer-ms-instrument-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory" placeholder="e.g. Q-TOF; LTQ - Orbitrap">
420 </div>
421 <div class="form-group input-group has-warning">
422 <span class="input-group-addon">Model</span>
423 <input id="add1spectrum-analyzer-ms-model-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. QToF micro (Micromass Waters); XL; Impact II; ...">
424 </div>
425 <div class="form-group">
426 <div class="form-group input-group has-error">
427 <span class="input-group-addon">Ion analyzer Type</span>
428 <input id="add1spectrum-analyzer-ms-ionAnalyzerType-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory" placeholder="e.g. QTOF; QQQ; ...">
429 </div>
430 <p class="help-block">
431 <small>
432 Ion analyzer types are "B", "E", "FT" (include other types using FT like FTICR or Orbitrap), "IT", "Q", "TOF" (e.g.: "QTOF", "QQQ", "EB", "ITFT");
433 for further informations please refer to <a target="_BLANK" href="https://github.com/MassBank/MassBank-web/blob/main/Documentation/MassBankRecordFormat.md#212-record_title">MassBank Record documentation</a>.
434 </small>
435 </p>
436 </div>
437 </div>
438 </div>
439 </div>
440 <div class="col-lg-6">
441 <br>
442 <div class="panel panel-default">
443 <div class="panel-heading">
444 <h3 class="panel-title">Molecule Ionization</h3>
445 </div>
446 <div class="panel-body">
447 <div class="form-group input-group has-error">
448 <span class="input-group-addon">Ionization method <small>(POS/NEG)</small></span>
449 <select
450 id="add1spectrum-analyzserMS-ionizationMethod-pos-{{ TAB_INDEX_PLACEHOLDER }}"
451 style="max-width: 50%;"
452 class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory one-or-more"
453 >
454 </select>
455 <select
456 id="add1spectrum-analyzserMS-ionizationMethod-neg-{{ TAB_INDEX_PLACEHOLDER }}"
457 style="max-width: 50%;"
458 class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory one-or-more"
459 >
460 </select>
461 </div>
462 <div class="form-group input-group has-warning">
463 <span class="input-group-addon">
464 Spray (needle) gaz flow <br><small>(arbitrary in Xcalibur, POS/NEG)</small>
465 </span>
466 <input
467 id="add1spectrum-analyzserMS-sprayGazFlow-pos-{{ TAB_INDEX_PLACEHOLDER }}"
468 style="max-width: 50%;"
469 type="text"
470 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
471 placeholder="e.g. 40 (POS)"
472 >
473 <input
474 id="add1spectrum-analyzserMS-sprayGazFlow-neg-{{ TAB_INDEX_PLACEHOLDER }}"
475 style="max-width: 50%;"
476 type="text"
477 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
478 placeholder="e.g. 20 (NEG)"
479 >
480 </div>
481 <div class="form-group input-group has-warning">
482 <span class="input-group-addon">
483 Vaporizer gaz flow <br><small>(arbitrary in Xcalibur, POS/NEG)</small>
484 </span>
485 <input
486 id="add1spectrum-analyzserMS-vaporizerGazFlow-pos-{{ TAB_INDEX_PLACEHOLDER }}"
487 style="max-width: 50%;"
488 type="text"
489 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
490 placeholder="e.g. 10 (POS)"
491 />
492 <input
493 id="add1spectrum-analyzserMS-vaporizerGazFlow-neg-{{ TAB_INDEX_PLACEHOLDER }}"
494 style="max-width: 50%;"
495 type="text"
496 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
497 placeholder="e.g. 5 (NEG)"
498 />
499 </div>
500 <div class="form-group input-group has-warning">
501 <span class="input-group-addon">
502 Vaporizer temperature <br><small>(°C, POS/NEG)</small>
503 </span>
504 <input
505 id="add1spectrum-analyzserMS-vaporizerTemperature-pos-{{ TAB_INDEX_PLACEHOLDER }}"
506 style="max-width: 50%;"
507 type="text"
508 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
509 placeholder="e.g. 330 (POS)"
510 />
511 <input
512 id="add1spectrum-analyzserMS-vaporizerTemperature-neg-{{ TAB_INDEX_PLACEHOLDER }}"
513 style="max-width: 50%;"
514 type="text"
515 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
516 placeholder="e.g. 330 (NEG)"
517 />
518 </div>
519 <div class="form-group input-group has-warning">
520 <span class="input-group-addon">
521 Source gaz flow <br><small>(arbitrary in Xcalibur, POS/NEG)</small>
522 </span>
523 <input
524 id="add1spectrum-analyzserMS-sourceGazFlow-pos-{{ TAB_INDEX_PLACEHOLDER }}"
525 style="max-width: 50%;"
526 type="text"
527 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
528 placeholder="e.g. 40 (POS)"
529 />
530 <input
531 id="add1spectrum-analyzserMS-sourceGazFlow-neg-{{ TAB_INDEX_PLACEHOLDER }}"
532 style="max-width: 50%;"
533 type="text"
534 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
535 placeholder="e.g. 40 (NEG)"
536 />
537 </div>
538 <div class="form-group input-group has-warning">
539 <span class="input-group-addon">
540 Ion transfer tube temperature <br> Transfer capillary temperature <small>(°C, POS/NEG)</small>
541 </span>
542 <input
543 id="add1spectrum-analyzserMS-ionTransferTubeTemperatureOrTransferCapillaryTemperature-pos-{{ TAB_INDEX_PLACEHOLDER }}"
544 style="max-width: 50%;"
545 type="text"
546 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
547 placeholder="e.g. 350 (POS)"
548 />
549 <input
550 id="add1spectrum-analyzserMS-ionTransferTubeTemperatureOrTransferCapillaryTemperature-neg-{{ TAB_INDEX_PLACEHOLDER }}"
551 style="max-width: 50%;"
552 type="text"
553 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
554 placeholder="e.g. 350 (NEG)"
555 />
556 </div>
557 <div class="form-group input-group has-warning">
558 <span class="input-group-addon">
559 High voltage (ESI) <br> Corona voltage (APCI) <small>(in kV, POS/NEG)</small>
560 </span>
561 <input
562 id="add1spectrum-analyzserMS-highVoltageOrCoronaVoltage-pos-{{ TAB_INDEX_PLACEHOLDER }}"
563 style="max-width: 50%;"
564 type="text"
565 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
566 placeholder="e.g. 3.5 (POS)"
567 />
568 <input
569 id="add1spectrum-analyzserMS-highVoltageOrCoronaVoltage-neg-{{ TAB_INDEX_PLACEHOLDER }}"
570 style="max-width: 50%;"
571 type="text"
572 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
573 placeholder="e.g. 2.8 (NEG)"
574 />
575 </div>
576 </div>
577 </div>
578 </div>
579 <div class="col-lg-6 opt-msms">
580 <br>
581 <div class="panel panel-default">
582 <div class="panel-heading">
583 <h3 class="panel-title">Ion Storage / Ion Beam</h3>
584 </div>
585 <div class="panel-body">
586 <div class="form-group input-group has-warning">
587 <span class="input-group-addon">Type <small>(storage / beam)</small></span>
588 <select id="add1spectrum-ionTrapBeam-type-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional one-or-more">
589 <option value="" selected="selected" disabled="disabled">choose in list…</option>
590 <option value="trap">Ion Trap</option>
591 <option value="beam">Ion Beam</option>
592 </select>
593 </div>
594 <p class="help-block">
595 <small>
596 Ion storage: Ion Trap (IT) and ICR.
597 <br>Ion beam: Q or H collision Cell (QQQ, QQIT, QQ/TOF, Fusion).
598 </small>
599 </p>
600 <div class="form-group input-group has-success">
601 <span class="input-group-addon">Gas </span>
602 <select id="add1spectrum-ionTrapBeam-ionGas-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional ">
603 <option value="He">He</option>
604 <option value="N2">N2</option>
605 <option value="Ar">Ar</option>
606 </select>
607 </div>
608 <div class="form-group input-group has-warning">
609 <span class="input-group-addon">Gas pressure</span>
610 <input
611 id="add1spectrum-ionTrapBeam-ionGasPressureValue-{{ TAB_INDEX_PLACEHOLDER }}"
612 type="text"
613 style="max-width: 50%;"
614 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
615 />
616 <select
617 id="add1spectrum-ionTrapBeam-ionGasPressureUnit-{{ TAB_INDEX_PLACEHOLDER }}"
618 style="max-width: 50%;"
619 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
620 >
621 <option value="" selected="selected" disabled="disabled">choose in list…</option>
622 <option value="mbar">mbar</option>
623 <option value="au">a.u.</option>
624 </select>
625 </div>
626 <div class="form-group input-group add1spectrum-ionTrap has-warning">
627 <span class="input-group-addon">Frequency Shift <small>(KHz)</small></span>
628 <input
629 id="add1spectrum-ionTrapBeam-ionFrequencyShift-{{ TAB_INDEX_PLACEHOLDER }}"
630 type="text"
631 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
632 placeholder="e.g.: ..."
633 />
634 </div>
635 <div class="form-group input-group add1spectrum-ionTrap has-warning">
636 <span class="input-group-addon">Ion Number <small>(AGC or ICC)</small></span>
637 <input
638 id="add1spectrum-ionTrapBeam-ionNumber-{{ TAB_INDEX_PLACEHOLDER }}"
639 type="text"
640 class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional"
641 placeholder="e.g.: ..."
642 />
643 </div>
644 </div>
645 </div>
646 </div>
647 </div>
648 <div class="col-lg-12">
649 <div class="col-lg-8">
650 <br>
651 <button
652 id="btnSwitch-gotoStep4-ms-{{ TAB_INDEX_PLACEHOLDER }}"
653 onclick="ctx().switchToStep(4);"
654 class="btn btn-disabled switchStep"
655 disabled=""
656 >
657 <i class="fa fa-arrow-circle-down"></i> Next!
658 </button>
659 </div>
660 <div class="col-lg-4">&nbsp;</div>
661 </div>
662 </div>
663 </div>
664 </div>
665 <div
666 id="add1spectrum-peaksData-MS-{{ TAB_INDEX_PLACEHOLDER }}"
667 class="panel panel-default"
668 style="display: none;"
669 >
670 <div class="panel-heading panel-success">
671 <h4 class="panel-title">
672 <a
673 id="linkActivateStep4-ms-{{ TAB_INDEX_PLACEHOLDER }}"
674 data-toggle="collapse"
675 data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}"
676 href="#step4-ms-{{ TAB_INDEX_PLACEHOLDER }}"
677 >
678 MS Peaks
679 <i
680 id="step4-ms-sign-{{ TAB_INDEX_PLACEHOLDER }}"
681 class="fa fa-question-circle"
682 ></i>
683 </a>
684 </h4>
685 </div>
686 <div id="step4-ms-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse">
687 <div class="panel-body">
688 <div class="col-lg-12">
689 <div class="form-group input-group col-lg-3 has-success">
690 <span class="input-group-addon">scan type</span>
691 <select
692 style="width: 150px;"
693 id="add1spectrum-peaksMS-msLevel-{{ TAB_INDEX_PLACEHOLDER }}"
694 class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-mandatory"
695 >
696 <option value="" disabled="disabled">choose in list…</option>
697 <option class="enable-if-ms" value="ms" disabled="disabled" selected="selected">ms</option>
698 <option class="enable-if-msms" value="ms2" disabled="disabled">ms2</option>
699 <!-- <option class="enable-if-msms" value="ms3" disabled="disabled">ms3</option> -->
700 </select>
701 </div>
702 <div class="form-group input-group col-lg-3 has-error">
703 <span class="input-group-addon">polarity</span>
704 <select
705 style="width: 150px;"
706 id="add1spectrum-peaksMS-polarity-{{ TAB_INDEX_PLACEHOLDER }}"
707 class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-mandatory"
708 >
709 <option value="" selected="selected" disabled="disabled">choose in list…</option>
710 <option value="positive" disabled="disabled">positive</option>
711 <option value="negative" disabled="disabled">negative</option>
712 </select>
713 </div>
714 <div class="form-group input-group col-lg-3 has-error">
715 <span class="input-group-addon">resolution</span>
716 <select
717 style="width: 150px;"
718 id="add1spectrum-peaksMS-resolution-{{ TAB_INDEX_PLACEHOLDER }}"
719 class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-mandatory"
720 >
721 <option value="" disabled="disabled">choose in list…</option>
722 <option value="low">low</option>
723 <option selected="selected" value="high">high</option>
724 </select>
725 </div>
726 <div class="form-group input-group col-lg-3 has-success">
727 <span class="input-group-addon">curation</span>
728 <select
729 style="width: 150px;"
730 id="add1spectrum-peaksMS-curation-{{ TAB_INDEX_PLACEHOLDER }}"
731 class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-optional"
732 >
733 <option value="no_curation" selected="selected">no curation</option>
734 <option value="peaks_RI_sup_1percent">Peaks RI &gt; 1%</option>
735 <option value="top_50_peaks">Top 50 peaks</option>
736 <option value="top_20_peaks">Top 20 peaks</option>
737 <option value="top_10_peaks">Top 10 peaks</option>
738 <option value="similar_chromatographic_profile">Similar chromatographic profile</option>
739 </select>
740 </div>
741 </div>
742 <br>
743 <div class="col-lg-12 opt-msms">
744 <hr>
745 <div class="form-group input-group col-lg-4 has-success">
746 <span class="input-group-addon">
747 Isolation mode <i class="fa fa-question-circle" title="IT / Q / TOF / ICR"></i>
748 </span>
749 <select
750 id="add1spectrum-peaksMS-isolationMode-{{ TAB_INDEX_PLACEHOLDER }}"
751 class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm is-optional add1spectrum-peaksMSForm-peaklist-reset"
752 >
753 <option value="" disabled="disabled">choose in list…</option>
754 <option value="IT">IT</option>
755 <option value="Q">Q</option>
756 <option value="TOF">TOF</option>
757 <option value="ICR">ICR</option>
758 </select>
759 </div>
760 <div class="form-group input-group col-lg-4 has-warning">
761 <span class="input-group-addon">
762 Isolation window <i class="fa fa-question-circle" title="(+ / - value)"></i>
763 </span>
764 <input
765 id="add1spectrum-peaksMS-isolationWindow-{{ TAB_INDEX_PLACEHOLDER }}"
766 type="text"
767 class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional add1spectrum-peaksMSForm-peaklist-reset"
768 placeholder="e.g. ..."
769 />
770 </div>
771 <div class="form-group input-group col-lg-4 has-warning">
772 <span class="input-group-addon">qz isolation / activation <i class="fa fa-question-circle" title="if IT"></i> <small>(no unit)</small></span>
773 <input
774 id="add1spectrum-peaksMS-qzIsolation-{{ TAB_INDEX_PLACEHOLDER }}"
775 type="text"
776 class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional add1spectrum-peaksMSForm-peaklist-reset"
777 placeholder="e.g. ..."
778 />
779 </div>
780 <div class="form-group input-group col-lg-4 has-warning">
781 <span class="input-group-addon">Activation time <i class="fa fa-question-circle" title="if FT-ICR (SORI-CID) or IT"></i> <small>(ms)</small></span>
782 <input
783 id="add1spectrum-peaksMS-activationTime-{{ TAB_INDEX_PLACEHOLDER }}"
784 type="text"
785 class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional add1spectrum-peaksMSForm-peaklist-reset"
786 placeholder="e.g. ..."
787 />
788 </div>
789 <div class="form-group input-group col-lg-4 has-success">
790 <span class="input-group-addon">
791 Mode <i class="fa fa-question-circle" title="HCD / CID / ECD /ETD"></i>
792 </span>
793 <select
794 id="add1spectrum-peaksMS-mode-{{ TAB_INDEX_PLACEHOLDER }}"
795 class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm is-optional"
796 >
797 <option value="" disabled="disabled">choose in list…</option>
798 <option value="HCD">HCD</option>
799 <option value="CID">CID</option>
800 <option value="ECD">ECD</option>
801 <option value="ETD">ETD</option>
802 </select>
803 </div>
804
805 <div class="form-group input-group col-lg-4 has-warning">
806 <span class="input-group-addon">
807 Frag. energy <i class="fa fa-question-circle" title="without unit"></i>
808 </span>
809 <input
810 id="add1spectrum-peaksMS-frag-nrj-{{ TAB_INDEX_PLACEHOLDER }}"
811 type="text"
812 class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional"
813 placeholder="e.g. ..."
814 >
815 </div>
816 </div>
817 <div class="col-lg-12">
818 <div class="form-group input-group col-lg-4 has-warning">
819 <span class="input-group-addon">
820 Resolution FWHM <small>(resolution@mass)</small>
821 </span>
822 <input
823 id="add1spectrum-analyzer-ms-resolutionFWHM-{{ TAB_INDEX_PLACEHOLDER }}"
824 type="text"
825 class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional"
826 placeholder="e.g. 6500@1000"
827 />
828 </div>
829 <div class="form-group input-group col-lg-4 has-error">
830 <span class="input-group-addon">
831 m/z range <small>(ppm) from / to</small>
832 </span>
833 <input
834 style="width: 100px;"
835 id="add1spectrum-peaksMS-rangeFrom-{{ TAB_INDEX_PLACEHOLDER }}"
836 type="text"
837 class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory"
838 placeholder="50"
839 value="{{ DEFAULT_MIN_MZ }}"
840 />
841 <input
842 style="width: 100px;"
843 id="add1spectrum-peaksMS-rangeTo-{{ TAB_INDEX_PLACEHOLDER }}"
844 type="text"
845 class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory"
846 placeholder="500"
847 value="{{ DEFAULT_MAX_MZ }}"
848 />
849 </div>
850 <div class="form-group input-group col-lg-4 has-error">
851 <span class="input-group-addon">
852 retention time (min) <small>from / to</small>
853 </span>
854 <input
855 style="width: 100px;"
856 id="add1spectrum-peaksMS-rtMinFrom-{{ TAB_INDEX_PLACEHOLDER }}"
857 type="text"
858 class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory"
859 placeholder="0.9"
860 value="{{ DEFAULT_MIN_RT }}"
861 />
862 <input
863 style="width: 100px;"
864 id="add1spectrum-peaksMS-rtMinTo-{{ TAB_INDEX_PLACEHOLDER }}"
865 type="text"
866 class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory"
867 placeholder="1.4"
868 value="{{ DEFAULT_MAX_RT }}"
869 />
870 </div>
871 </div>
872 <div class="col-lg-12">
873 <div class="form-group input-group col-lg-4 has-warning">
874 <span class="input-group-addon">
875 retention time (% solvant) <small>from / to</small>
876 </span>
877 <input
878 style="width: 100px;"
879 id="add1spectrum-peaksMS-rtSolvFrom-{{ TAB_INDEX_PLACEHOLDER }}"
880 type="text"
881 class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-optional"
882 placeholder="??"
883 />
884 <input
885 style="width: 100px;"
886 id="add1spectrum-peaksMS-rtSolvTo-{{ TAB_INDEX_PLACEHOLDER }}"
887 type="text"
888 class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-optional"
889 placeholder="??"
890 />
891 </div>
892 <div class="col-lg-4">&nbsp;</div>
893 <div class="col-lg-4">&nbsp;</div>
894 </div>
895 <div class="col-xs-12 col-lg-12">
896 <ul class="nav nav-tabs" style="margin-bottom: 15px;display: block;">
897 {{ TAB_LIST_PLACEHOLDER }}
898 </ul>
899 <div class="tab-content">
900 {{ ADD_SPECTRUM_FORM }}
901 </div>
902 </div>
903 <div class="col-lg-12">
904 <div class="col-lg-8">
905 <button
906 class="btn btn-success add1spectrum"
907 onclick="$('#add1spectrum-peaksMS-msPrecursorIon-{{ TAB_INDEX_PLACEHOLDER }}').change()"
908 >check</button>
909 <button
910 id="btnSwitch-gotoStep5-ms-{{ TAB_INDEX_PLACEHOLDER }}"
911 onclick="$('#open_tab_1').click();setTimeout(()=>ctx().switchToStep(5), 100);"
912 class="btn switchStep btn-primary"
913 ><i class="fa fa-arrow-circle-down"></i> Next!</button>
914 <br>
915 <br>
916 </div>
917 <div class="col-lg-4">&nbsp;</div>
918 </div>
919 </div>
920 </div>
921 </div>
922
923
924 <div
925 id="add1spectrum-otherData-{{ TAB_INDEX_PLACEHOLDER }}"
926 class="panel panel-default"
927 style="display: none;"
928 >
929 <div class="panel-heading panel-success">
930 <h4 class="panel-title">
931 <a id="linkActivateStep5-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step5-{{ TAB_INDEX_PLACEHOLDER }}">
932 Other <i id="step5sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle"></i>
933 </a>
934 </h4>
935 </div>
936 <div id="step5-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse">
937 <div class="panel-body">
938 <div class="col-lg-12">
939 <div class="col-lg-6">
940 <div class="panel panel-default">
941 <div class="panel-heading">
942 <h3 class="panel-title">Ownership</h3>
943 </div>
944 <div class="panel-body">
945 <div class="form-group input-group has-error">
946 <span class="input-group-addon">data author(s)</span>
947 <input
948 id="add1spectrum-other-author-{{ TAB_INDEX_PLACEHOLDER }}"
949 type="text"
950 class="form-control add1spectrum add1spectrum-otherForm is-mandatory"
951 placeholder="enter your lab. / plateforme name"
952 value=""
953 />
954 </div>
955 <div class="form-group input-group has-warning">
956 <span class="input-group-addon">data validator(s)</span>
957 <input
958 id="add1spectrum-other-validator-{{ TAB_INDEX_PLACEHOLDER }}"
959 type="text"
960 class="form-control add1spectrum add1spectrum-otherForm is-optional"
961 placeholder="name of the personne who checked all data in this file"
962 />
963 </div>
964 <div class="form-group input-group has-warning">
965 <span class="input-group-addon">acquisition date</span>
966 <input
967 id="add1spectrum-other-date-{{ TAB_INDEX_PLACEHOLDER }}"
968 data-date-format="yyyy-mm-dd"
969 type="text"
970 class="form-control add1spectrum add1spectrum-otherForm datepicker is-optional"
971 value=""
972 placeholder="2022-11-04"
973 />
974 </div>
975 <div class="form-group input-group has-warning">
976 <span class="input-group-addon">data ownership</span>
977 <input
978 id="add1spectrum-other-owner-{{ TAB_INDEX_PLACEHOLDER }}"
979 type="text"
980 class="form-control add1spectrum add1spectrum-otherForm is-optional"
981 placeholder="enter your lab. / plateforme name &amp; sample provider;"
982 />
983 </div>
984 </div>
985 </div>
986 </div>
987 <div class="col-lg-6">
988 <div class="panel panel-default">
989 <div class="panel-heading">
990 <h3 class="panel-title">Raw File</h3>
991 </div>
992 <div class="panel-body">
993 <div class="form-group input-group has-warning">
994 <span class="input-group-addon">raw file name</span>
995 <input
996 id="add1spectrum-other-fileName-{{ TAB_INDEX_PLACEHOLDER }}"
997 type="text"
998 class="form-control add1spectrum add1spectrum-otherForm is-optional"
999 placeholder="needed to retrieve file later"
1000 />
1001 </div>
1002 <div class="form-group input-group has-warning">
1003 <span class="input-group-addon">raw file size (Ko)</span>
1004 <input
1005 id="add1spectrum-other-fileSize-{{ TAB_INDEX_PLACEHOLDER }}"
1006 type="text"
1007 class="form-control add1spectrum add1spectrum-otherForm is-optional"
1008 placeholder="optional, to check if the file is correct"
1009 />
1010 </div>
1011 </div>
1012 </div>
1013 </div>
1014 </div>
1015 <div class="col-lg-12">
1016 <div class="col-lg-8">
1017 <br>
1018 <button
1019 id="btnSwitch-gotoStep6-{{ TAB_INDEX_PLACEHOLDER }}"
1020 onclick="ctx().switchToStep(6);"
1021 class="btn btn-disabled switchStep"
1022 disabled=""
1023 >
1024 <i class="fa fa-arrow-circle-right"></i> Validate this compound/mix!
1025 </button>
1026 <span
1027 id="import1SpectrumLoadingBare-{{ TAB_INDEX_PLACEHOLDER }}"
1028 style="display: none;"><img
1029 src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/img/ajax-loader.gif"
1030 title="please wait"
1031 ></span>
1032 <span
1033 id="import1SpectrumResults-{{ TAB_INDEX_PLACEHOLDER }}"
1034 style="display: none;"
1035 >
1036 <button
1037 id="btnSwitch-view-{{ TAB_INDEX_PLACEHOLDER }}"
1038 data-toggle="modal"
1039 data-target="#modalShowSpectra-{{ TAB_INDEX_PLACEHOLDER }}"
1040 class="btn btn-success"
1041 >
1042 <i class="fa fa-eye"></i> View spectrum
1043 </button>
1044 <button
1045 id="btnSwitch-returntoStep3-{{ TAB_INDEX_PLACEHOLDER }}"
1046 onclick="ctx().switchToStep(3);"
1047 class="btn btn-primary"
1048 >
1049 <i class="fa fa-arrow-circle-up"></i> Add new peaklist!
1050 </button>
1051 </span>
1052 </div>
1053 <div class="col-lg-4">
1054 <br>
1055 <br>
1056 <br>
1057 </div>
1058 </div>
1059 <div class="col-lg-12">
1060 <div class="col-lg-8">
1061 <div
1062 id="alertBoxSubmitSpectrum-{{ TAB_INDEX_PLACEHOLDER }}"
1063 class="col-lg-6"
1064 ></div>
1065 </div>
1066 <div class="col-lg-4">&nbsp;</div>
1067 </div>
1068 </div>
1069 </div>
1070 </div>
1071 <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/handsontable/dist/handsontable.full.min.js"></script>
1072 <link
1073 rel="stylesheet"
1074 media="screen"
1075 href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/handsontable/dist/handsontable.full.min.css"
1076 >
1077 <link
1078 rel="stylesheet"
1079 media="screen"
1080 href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/handsontable/bootstrap/handsontable.bootstrap.min.css"
1081 >
1082 <div
1083 class="modal"
1084 id="modalPickCompound-{{ TAB_INDEX_PLACEHOLDER }}"
1085 tabindex="-1"
1086 role="dialog"
1087 aria-labelledby="modalPickCompoundLabel-{{ TAB_INDEX_PLACEHOLDER }}"
1088 aria-hidden="true"
1089 >
1090 <div class="modal-dialog">
1091 <div class="modal-content">
1092 <div class="modal-header">
1093 <button
1094 type="button"
1095 class="close"
1096 data-dismiss="modal"
1097 aria-hidden="true"
1098 >×</button>
1099 <h4
1100 class="modal-title"
1101 id="modalPickCompoundLabel-{{ TAB_INDEX_PLACEHOLDER }}"
1102 >
1103 Pick a compound
1104 </h4>
1105 </div>
1106 <div class="modal-body">
1107 <div class="form-group input-group">
1108 <span class="input-group-addon">Compound Name</span>
1109 <input
1110 id="add-one-cc-s1-value-{{ TAB_INDEX_PLACEHOLDER }}"
1111 class="form-control"
1112 placeholder="e.g. Caffeine"
1113 type="text"
1114 />
1115 <span class="input-group-btn">
1116 <button
1117 class="btn btn-default"
1118 type="button"
1119 onclick="ctx().searchLocalCompound();"
1120 >
1121 <i class="fa fa-search"></i>
1122 </button>
1123 </span>
1124 </div>
1125 <div id="load-step-1-{{ TAB_INDEX_PLACEHOLDER }}" style="display: none;">
1126 <img src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/img/ajax-loader.gif" title="please wait">
1127 </div>
1128 <div
1129 id="ok-step-1-{{ TAB_INDEX_PLACEHOLDER }}"
1130 style="overflow: auto; max-height: 300px;"
1131 ></div>
1132 </div>
1133 <div class="modal-footer">
1134 <button
1135 type="button"
1136 class="btn btn-danger"
1137 data-dismiss="modal"
1138 onclick="ctx().clearLine()"
1139 >
1140 <i class="fa fa-eraser"></i> Clear
1141 </button>
1142 <button
1143 type="button"
1144 class="btn btn-default"
1145 data-dismiss="modal"
1146 >Fermer</button>
1147 </div>
1148 </div>
1149 </div>
1150 </div>
1151 <div
1152 class="modal "
1153 id="modalShowSpectra-{{ TAB_INDEX_PLACEHOLDER }}"
1154 tabindex="-1"
1155 role="dialog"
1156 aria-labelledby="modalShowSpectraLabel-{{ TAB_INDEX_PLACEHOLDER }}"
1157 aria-hidden="true"
1158 >
1159 <div class="modal-dialog">
1160 <div class="modal-content">
1161 <div class="modal-header">
1162 <button
1163 type="button"
1164 class="close"
1165 data-dismiss="modal"
1166 aria-hidden="true"
1167 >×</button>
1168 <h4
1169 class="modal-title"
1170 id="modalShowSpectraLabel-{{ TAB_INDEX_PLACEHOLDER }}"
1171 >Modal title</h4>
1172 </div>
1173 <div class="modal-body">
1174 <div class="te"></div>
1175 </div>
1176 <div class="modal-footer">
1177 </div>
1178 </div>
1179 </div>
1180 </div>
1181 </div>
1182 </div>
1183 </div>
1184 <div>
1185 <button
1186 onclick="send_everything_to_peakforest('{{ PF_URL_PLACEHOLDER }}', '{{ PF_TOKEN_PLACEHOLDER }}')"
1187 class="btn btn-success"
1188 >
1189 <i class="fa fa-arrow-circle-right"></i>
1190 Send everything to peakforest!
1191 </button>
1192 <button class="btn btn-validate" onclick="ctx().exit()">
1193 Close MS2PF
1194 </button>
1195 </div>
1196 <script
1197 type="text/javascript"
1198 src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/jqueryform/2.8/jquery.form.min.js"
1199 ></script>
1200 <script
1201 src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/md5.min.js"
1202 ></script>
1203 </div>
1204 <nav class="navbar navbar-default navbar-fixed-bottom navbar-inverse navbar-main" role="navigation">
1205 <div class="navbar-header navbar-inverse footer">
1206 <ul id="ul-info-footer" class="nav navbar-nav">
1207 <li class="li-info-footer"><a id="linkcontact" href="mailto:contact@peakforest.org?subject=%5Babout%20peakforest%20webapp%5D">Contact</a></li>
1208 <li class="li-info-footer">
1209 <a id="about-peakforest" href="about-peakforest" data-toggle="modal" data-target="#modalAbout">À propos</a>
1210 </li>
1211 <li class="li-info-footer">
1212 <a href="https://peakforest.org/mypeakforest" target="_blank">Ma PeakForest</a>
1213 </li>
1214 <li class="li-info-footer">
1215 <a href="http://metabohub.fr" target="_blank">metaboHUB</a>
1216 </li>
1217 </ul>
1218 </div>
1219 </nav>
1220 <div
1221 class="modal"
1222 id="modalAbout"
1223 tabindex="-1"
1224 role="dialog"
1225 aria-labelledby="modalAboutLabel"
1226 aria-hidden="true"
1227 >
1228 <div class="modal-dialog">
1229 <div class="modal-content">
1230 <div class="modal-header">
1231 <button
1232 type="button"
1233 class="close"
1234 data-dismiss="modal"
1235 aria-hidden="true"
1236 >×</button>
1237 <h4 class="modal-title" id="modalAboutLabel">À propos de la Base de Données PeakForest</h4>
1238 </div>
1239 <div class="modal-body">
1240 <div class="te"></div>
1241 </div>
1242 <div class="modal-footer">
1243 </div>
1244 </div>
1245 </div>
1246 </div>
1247 <div
1248 class="modal"
1249 id="modalMyPeakForest"
1250 tabindex="-1"
1251 role="dialog"
1252 aria-labelledby="modalMyPFLabel"
1253 aria-hidden="true"
1254 >
1255 <div class="modal-dialog">
1256 <div class="modal-content">
1257 <div class="modal-header">
1258 <button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button>
1259 <h4 class="modal-title" id="modalAboutLabel">Ma base de Données PeakForest</h4>
1260 </div>
1261 <div class="modal-body">
1262 <div class="te"></div>
1263 </div>
1264 <div class="modal-footer">
1265 </div>
1266 </div>
1267 </div>
1268 </div>
1269 {{ EMBED_JS }}
1270 <script type="text/javascript">context = context_1 ;</script>
1271 </body>
1272 </html>