Mercurial > repos > lain > ms_to_peakforest_it
diff meta-compound-mix.html @ 0:b58b229c4cbf draft
planemo upload commit 523a9c8df173302ad38e9f15e7d82eab01736551-dirty
| author | lain |
|---|---|
| date | Fri, 03 Mar 2023 14:10:24 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/meta-compound-mix.html Fri Mar 03 14:10:24 2023 +0000 @@ -0,0 +1,1272 @@ +<!doctype HTML> +<html lang="en"> + <head> + <meta charset="utf-8"> + <meta name="viewport" content="width=device-width, initial-scale=1.0"> + <meta name="author" content="MetaboHUB"> + <link rel="icon" type="image/ico" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/ico/favicon.ico"> + <title>PeakForest MetaboHub</title> + <meta name="keywords" content="spectral database, mass spectrometry, nmr, lc-ms, gc-ms, chemical, metabolomic, compound, library"> + <meta name="description" content="PeakForest is a spectral data portal for Metabolomics community. It provides storage and annotation services for metabolic profils of biological matrix. It relies on the wide range of complementary methods using UPLC-(API)HRMS, GC-QToF, and NMR."> + <style>.file-input-wrapper { overflow: hidden; position: relative; cursor: pointer; z-index: 1; }.file-input-wrapper input[type=file], .file-input-wrapper input[type=file]:focus, .file-input-wrapper input[type=file]:hover { position: absolute; top: 0; left: 0; cursor: pointer; opacity: 0; filter: alpha(opacity=0); z-index: 99; outline: 0; }.file-input-name { margin-left: 8px; }</style> + <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap.min.css" rel="stylesheet"> + <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/sb-admin.min.css" rel="stylesheet"> + <link rel="stylesheet" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/font-awesome/css/font-awesome.min.css"> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/jquery.min.js"></script> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap.min.js"></script> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap-typeahead.min.js"></script> + <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap-select.min.css" media="screen" rel="stylesheet" type="text/css"> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap-select.min.js" type="text/javascript"></script> + <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap-datepicker.min.css" media="screen" rel="stylesheet" type="text/css"> + <script type="text/javascript" src="/common.js"></script> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/bootstrap-datepicker.min.js" type="text/javascript"></script> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/jquery.tmpl.min.js" type="text/javascript"></script> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/highcharts/js/highcharts.min.js"></script> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/highcharts/js/modules/exporting.min.js"></script> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/highcharts/js/themes/grid.min.js"></script> + <link href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/css/bootstrap.overwrite.min.css" rel="stylesheet" media="screen"> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/peakforest.min.js"></script> + <script type="text/javascript" src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/tablesorter/jquery.tablesorter.min.js"></script> + <script type="text/javascript" src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/tablesorter/tables.min.js"></script> + <link rel="stylesheet" href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/nmrpro/specdraw.min.css" type="text/css"> + <meta name="viewport" content="width=device-width, initial-scale=1"> + </head> + <body> + <div id="page-wrapper" class="peakforest-main-wrapper"> + <div> + <button class="btn btn-validate" onclick="ctx().exit()">Close MS2PF</button> + </div> + <div class="row" style="margin-bottom: 50px;"> + <div id="add-spectrum"> + <div class="panel-group" id="accordion-{{ TAB_INDEX_PLACEHOLDER }}"> + <div class="panel panel-default"> + <div class="panel-heading panel-success"> + <h4 class="panel-title"> + <a + data-toggle="collapse" + data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" + href="#step0-{{ TAB_INDEX_PLACEHOLDER }}" + > + Spectrum Type + <i + id="step0sign-{{ TAB_INDEX_PLACEHOLDER }}" + class="fa fa-question-circle" + ></i> + </a> + </h4> + </div> + <div + id="step0-{{ TAB_INDEX_PLACEHOLDER }}" + class="panel-collapse collapse in" + > + <div class="panel-body"> + <button + class="btn btn-disabled" + disabled="disabled"><i + class="fa fa-plus-circle" + ></i> GC-MS spectrum</button> + <button + id="set_LC_MS_spectrum_button" + class="btn btn-primary" + onclick="ctx().addOneSpectrum(2);"><i + class="fa fa-plus-circle" + ></i> LC-MS spectrum</button> + <button + id="set_LC_MSMS_spectrum_button" + class="btn btn-primary" + onclick="ctx().addOneSpectrum(5);"><i + class="fa fa-plus-circle" + ></i> LC-MSMS spectrum</button> + </div> + </div> + </div> + <div + id="add1spectrum-sampleData-{{ TAB_INDEX_PLACEHOLDER }}" + class="panel panel-default" + style="display: none;"> + <div + class="panel-heading panel-success"> + <h4 + class="panel-title"> + <a + id="linkActivateStep1-{{ TAB_INDEX_PLACEHOLDER }}" + data-toggle="collapse" + data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" + href="#step1-{{ TAB_INDEX_PLACEHOLDER }}" + > + Sample Type + <i + id="step1sign-{{ TAB_INDEX_PLACEHOLDER }}" + class="fa fa-question-circle" + ></i> + </a> + </h4> + </div> + <div + id="step1-{{ TAB_INDEX_PLACEHOLDER }}" + class="panel-collapse collapse" + > + <div class="panel-body"> + <div class="col-lg-12"> + <div class="col-lg-8"> + <div class="panel panel-default"> + <div class="panel-heading"> + <div class="form-group input-group has-error"> + <span class="input-group-addon"> + Sample Type + </span> + <select + id="add1spectrum-sample-type-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control add1spectrum add1spectrum-sampleForm is-mandatory"> + <option + value="" + selected="selected" + disabled="disabled">choose in list…</option> + <option value="compound-mix"> + Mix of Ref. Chemical Compound + </option> + </select> + </div> + </div> + <div class="panel-body"> + <div + id="add1spectrum-sample-type-compound-mix-{{ TAB_INDEX_PLACEHOLDER }}" + class="add1spectrum-sample-type-panel" + style="display:none;"> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">solvent</span> + <select + id="add1spectrum-sample-mixSolvent-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control add1spectrum add1spectrum-sampleForm is-optional" + > + <option value="" selected="selected" disabled="disabled">choose in list…</option> + <option value="H2O/ethanol (75/25)">H2O/ethanol (75/25)</option> + </select> + </div> + </div> + <div + id="add1spectrum-sample-type-rcc-added-{{ TAB_INDEX_PLACEHOLDER }}" + class="panel panel-default add1spectrum-sample-type-panel" + style="display:none" + > + <div class="panel-heading"> + <h3 class="panel-title">Reference compound added</h3> + </div> + <div class="panel-body" style="padding: 0px;"> + <div + id="container_RCC_ADDED-{{ TAB_INDEX_PLACEHOLDER }}" + class="handsontable" + ></div> + </div> + </div> + </div> + </div> + </div> + <div class="col-lg-4"> + <div id="sample-bonus-display-{{ TAB_INDEX_PLACEHOLDER }}"></div> + + </div> + </div> + <div class="col-lg-12"> + <div class="col-lg-8"> + <br> + <button + id="btnSwitch-gotoStep2-{{ TAB_INDEX_PLACEHOLDER }}" + onclick="ctx().switchToStep(2)" + class="btn btn-disabled switchStep" + disabled="" + > + <i class="fa fa-arrow-circle-down"></i> Next! + </button> + </div> + <div class="col-lg-4"> </div> + </div> + </div> + </div> + </div> + <div + id="add1spectrum-chromatographyData-LC-{{ TAB_INDEX_PLACEHOLDER }}" + class="panel panel-default" + style="display: none;" + > + <div class="panel-heading panel-success"> + <h4 class="panel-title"> + <a + id="linkActivateStep2-lc-{{ TAB_INDEX_PLACEHOLDER }}" + data-toggle="collapse" + data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" + href="#step2-lc-{{ TAB_INDEX_PLACEHOLDER }}" + > + Liquid Chromatography + <i + id="step2-lc-sign-{{ TAB_INDEX_PLACEHOLDER }}" + class="fa fa-question-circle" + ></i> + </a> + </h4> + </div> + <div + id="step2-lc-{{ TAB_INDEX_PLACEHOLDER }}" + class="panel-collapse collapse" + > + <div class="panel-body"> + <div class="col-lg-12"> + <div class="col-lg-6"> + <div class="panel panel-default"> + <div class="panel-heading"> + <h3 class="panel-title">Chromatography Param.</h3> + </div> + <div class="panel-body"> + <div class="form-group input-group has-error"> + <span class="input-group-addon">Method</span> + <select + id="add1spectrum-chromatoLC-method-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" + ></select> + </div> + <div id="alertBoxSelectTemplate-{{ TAB_INDEX_PLACEHOLDER }}"></div> + <div class="form-group input-group has-error"> + <span class="input-group-addon">Column constructor</span> + <select + id="add1spectrum-chromatoLC-colConstructor-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" + > + <option value="" selected="selected" disabled="disabled">choose in list…</option> + <!-- + <option value="Agilent">Agilent</option> + <option value="alltech">Alltech</option> + <option value="CIL cluzeau">Cil cluzeau</option> + <option value="Daicel">Daicel</option> + <option value="Hypersil">Hypersil</option> + <option value="Interchim">Interchim</option> + <option value="Macherey nagel">Macherey nagel</option> + <option value="Merck">Merck</option> + <option value="Phenomenex">Phenomenex</option> + <option value="Shiseido">Shiseido</option> + <option value="Supelco (sigma-aldrich)">Supelco (sigma-aldrich)</option> + <option value="Thermo">Thermo</option> + <option value="Vydac">Vydac</option> + <option value="Waters">Waters</option> + <option value="YMC">YMC</option> + <option value="other">Other</option> + --> + </select> + </div> + <div class="form-group input-group "> + <span class="input-group-addon">Column constructor (other)</span> + <input id="add1spectrum-chromatoLC-colConstructorOther-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm" disabled="disabled" placeholder="e.g. HAL 9000"> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">Column name</span> + <input id="add1spectrum-chromatoLC-colName-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. UPLC HSS T3"> + </div> + <div class="form-group input-group has-error"> + <span class="input-group-addon">Column length (mm)</span> + <input id="add1spectrum-chromatoLC-colLength-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" placeholder="e.g. 150"> + </div> + <div class="form-group input-group has-error"> + <span class="input-group-addon">Column diameter (mm)</span> + <input id="add1spectrum-chromatoLC-colDiameter-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" placeholder="e.g. 2.1"> + </div> + <div class="form-group input-group has-error"> + <span class="input-group-addon">Particule size (µm)</span> + <input id="add1spectrum-chromatoLC-colParticuleSize-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" placeholder="e.g. 1.8"> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">Column temperature (°C)</span> + <input id="add1spectrum-chromatoLC-colTemperature-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 30"> + </div> + <div class="form-group input-group has-error"> + <span class="input-group-addon">LC mode</span> + <select id="add1spectrum-chromatoLC-LCMode-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory"> + <option value="" selected="selected" disabled="disabled">choose in list…</option> + <option value="Gradient">Gradient</option> + <option value="Isocratic">Isocratic</option> + </select> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">Separation flow rate (µL/min)</span> + <input id="add1spectrum-chromatoLC-separationFlowRate-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 400"> + </div> + <div class="form-group input-group has-error"> + <span class="input-group-addon">Separation solvent A</span> + <select + id="add1spectrum-chromatoLC-separationSolvA-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" + > + <option value="" selected="selected" disabled="disabled">choose in list…</option> + <!-- + <option value="5% ACN + 0.1% FA in H2O">5% ACN + 0.1% FA in H2O</option> + <option value="10% ACN + 0.1% FA in H2O">10% ACN + 0.1% FA in H2O</option> + <option value="10mM (NH4)2CO3 / ACN (20/80) (v/v)">10mM (NH4)2CO3 / ACN (20/80) (v/v)</option> + <option value="Acetonitrile">Acetonitrile</option> + <option value="Acetonitrile + 0.1% Formic Acid">Acetonitrile + 0.1% Formic Acid</option> + <option value="H2O + 0.1% Formic Acid">H2O + 0.1% Formic Acid</option> + <option value="H2O, ammonium carbonate 10 mM, pH10.5">H2O, ammonium carbonate 10 mM, pH10.5</option> + <option value="H2O, ammonium acetate 2.5 mM">H2O, ammonium acetate 2.5 mM</option> + <option value="H2O / CH3OH / CH3CO2H (95/5/0.1)">H2O / CH3OH / CH3CO2H (95/5/0.1)</option> + <option value="Methanol">Methanol</option> + <option value="Methanol / H2O (1/1)">Methanol / H2O (1/1)</option> + <option value="Methanol / H2O (1/1), 0.1% FA">Methanol / H2O (1/1), 0.1% FA</option> + <option value="Methanol / CH3CO2H (100/0.1)">Methanol / CH3CO2H (100/0.1)</option> + <option value="Methanol / ACN (60/40) ammonium acetate 2.5 mM">Methanol / ACN (60/40) ammonium acetate 2.5 mM</option> + --> + </select> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">pH solvent A (if acqueous solvant)</span> + <input id="add1spectrum-chromatoLC-separationSolvApH-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 7.0"> + </div> + <div class="form-group input-group has-error"> + <span class="input-group-addon">Separation solvent B</span> + <select + id="add1spectrum-chromatoLC-separationSolvB-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control add1spectrum add1spectrum-chromatoLCForm is-mandatory" + > + <!-- + <option value="" selected="selected" disabled="disabled">choose in list…</option> + <option value="5% ACN + 0.1% FA in H2O">5% ACN + 0.1% FA in H2O</option> + <option value="10% ACN + 0.1% FA in H2O">10% ACN + 0.1% FA in H2O</option> + <option value="10mM (NH4)2CO3 / ACN (20/80) (v/v)">10mM (NH4)2CO3 / ACN (20/80) (v/v)</option> + <option value="Acetonitrile">Acetonitrile</option> + <option value="Acetonitrile + 0.1% Formic Acid">Acetonitrile + 0.1% Formic Acid</option> + <option value="H2O + 0.1% Formic Acid">H2O + 0.1% Formic Acid</option> + <option value="H2O, ammonium carbonate 10 mM, pH10.5">H2O, ammonium carbonate 10 mM, pH10.5</option> + <option value="H2O, ammonium acetate 2.5 mM">H2O, ammonium acetate 2.5 mM</option> + <option value="H2O / CH3OH / CH3CO2H (95/5/0.1)">H2O / CH3OH / CH3CO2H (95/5/0.1)</option> + <option value="Methanol">Methanol</option> + <option value="Methanol / H2O (1/1)">Methanol / H2O (1/1)</option> + <option value="Methanol / H2O (1/1), 0.1% FA">Methanol / H2O (1/1), 0.1% FA</option> + <option value="Methanol / CH3CO2H (100/0.1)">Methanol / CH3CO2H (100/0.1)</option> + <option value="Methanol / ACN (60/40) ammonium acetate 2.5 mM">Methanol / ACN (60/40) ammonium acetate 2.5 mM</option> + --> + </select> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">pH solvent B (if acqueous solvant)</span> + <input id="add1spectrum-chromatoLC-separationSolvBApH-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-chromatoLCForm is-optional" placeholder="e.g. 7.0"> + </div> + </div> + </div> + </div> + <div class="col-lg-6"> + <div class="panel panel-default"> + <div class="panel-heading"> + <h3 class="panel-title">Separation flow gradient</h3> + </div> + <div class="panel-body" style="padding: 0px;"> + <div id="container_LC_SFG-{{ TAB_INDEX_PLACEHOLDER }}" class="handsontable"></div> + </div> + </div> + </div> + </div> + <div class="col-lg-12"> + <div class="col-lg-8"> + <br> + <button id="btnSwitch-gotoStep3-lc-{{ TAB_INDEX_PLACEHOLDER }}" onclick="ctx().switchToStep(3);" class="btn btn-disabled switchStep" disabled=""><i class="fa fa-arrow-circle-down"></i> Next!</button> + </div> + <div class="col-lg-4"> </div> + </div> + </div> + </div> + </div> + <div id="add1spectrum-chromatographyData-GC-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default" style="display: none;"> + <div class="panel-heading panel-success"> + <h4 class="panel-title"> + <a id="linkActivateStep2-gc-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step2-gc-{{ TAB_INDEX_PLACEHOLDER }}"> + Gaz Chromatography <i id="step2-gc-sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle"></i> + </a> + </h4> + </div> + <div id="step2-gc-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse"> + <div class="panel-body"> + <div class="col-lg-12"> + <div class="col-lg-6"> + i <3 GC + </div> + <div class="col-lg-6"> </div> + </div> + <div class="col-lg-12"> + <div class="col-lg-8"> + <br> + <button id="btnSwitch-gotoStep3-gc-{{ TAB_INDEX_PLACEHOLDER }}" onclick="ctx().switchToStep(3);" class="btn btn-disabled switchStep" disabled=""><i class="fa fa-arrow-circle-down"></i> Next!</button> + </div> + <div class="col-lg-4"> </div> + </div> + </div> + </div> + </div> + <div id="add1spectrum-analyserData-MS-{{ TAB_INDEX_PLACEHOLDER }}" class="panel panel-default" style="display: none;"> + <div class="panel-heading panel-success"> + <h4 class="panel-title"> + <a id="linkActivateStep3-ms-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step3-ms-{{ TAB_INDEX_PLACEHOLDER }}"> + MS Analyzer <i id="step3-ms-sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle"></i> + </a> + </h4> + </div> + <div id="step3-ms-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse"> + <div class="panel-body"> + <div class="col-lg-12"> + <div class="col-lg-6"> + <br> + <div class="panel panel-default"> + <div class="panel-heading"> + <h3 class="panel-title">Analyzer</h3> + </div> + <div class="panel-body"> + <div class="form-group input-group has-error"> + <span class="input-group-addon">Instrument</span> + <input id="add1spectrum-analyzer-ms-instrument-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory" placeholder="e.g. Q-TOF; LTQ - Orbitrap"> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">Model</span> + <input id="add1spectrum-analyzer-ms-model-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" placeholder="e.g. QToF micro (Micromass Waters); XL; Impact II; ..."> + </div> + <div class="form-group"> + <div class="form-group input-group has-error"> + <span class="input-group-addon">Ion analyzer Type</span> + <input id="add1spectrum-analyzer-ms-ionAnalyzerType-{{ TAB_INDEX_PLACEHOLDER }}" type="text" class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory" placeholder="e.g. QTOF; QQQ; ..."> + </div> + <p class="help-block"> + <small> + Ion analyzer types are "B", "E", "FT" (include other types using FT like FTICR or Orbitrap), "IT", "Q", "TOF" (e.g.: "QTOF", "QQQ", "EB", "ITFT"); + for further informations please refer to <a target="_BLANK" href="https://github.com/MassBank/MassBank-web/blob/main/Documentation/MassBankRecordFormat.md#212-record_title">MassBank Record documentation</a>. + </small> + </p> + </div> + </div> + </div> + </div> + <div class="col-lg-6"> + <br> + <div class="panel panel-default"> + <div class="panel-heading"> + <h3 class="panel-title">Molecule Ionization</h3> + </div> + <div class="panel-body"> + <div class="form-group input-group has-error"> + <span class="input-group-addon">Ionization method <small>(POS/NEG)</small></span> + <select + id="add1spectrum-analyzserMS-ionizationMethod-pos-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory one-or-more" + > + </select> + <select + id="add1spectrum-analyzserMS-ionizationMethod-neg-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-mandatory one-or-more" + > + </select> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon"> + Spray (needle) gaz flow <br><small>(arbitrary in Xcalibur, POS/NEG)</small> + </span> + <input + id="add1spectrum-analyzserMS-sprayGazFlow-pos-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 40 (POS)" + > + <input + id="add1spectrum-analyzserMS-sprayGazFlow-neg-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 20 (NEG)" + > + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon"> + Vaporizer gaz flow <br><small>(arbitrary in Xcalibur, POS/NEG)</small> + </span> + <input + id="add1spectrum-analyzserMS-vaporizerGazFlow-pos-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 10 (POS)" + /> + <input + id="add1spectrum-analyzserMS-vaporizerGazFlow-neg-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 5 (NEG)" + /> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon"> + Vaporizer temperature <br><small>(°C, POS/NEG)</small> + </span> + <input + id="add1spectrum-analyzserMS-vaporizerTemperature-pos-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 330 (POS)" + /> + <input + id="add1spectrum-analyzserMS-vaporizerTemperature-neg-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 330 (NEG)" + /> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon"> + Source gaz flow <br><small>(arbitrary in Xcalibur, POS/NEG)</small> + </span> + <input + id="add1spectrum-analyzserMS-sourceGazFlow-pos-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 40 (POS)" + /> + <input + id="add1spectrum-analyzserMS-sourceGazFlow-neg-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 40 (NEG)" + /> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon"> + Ion transfer tube temperature <br> Transfer capillary temperature <small>(°C, POS/NEG)</small> + </span> + <input + id="add1spectrum-analyzserMS-ionTransferTubeTemperatureOrTransferCapillaryTemperature-pos-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 350 (POS)" + /> + <input + id="add1spectrum-analyzserMS-ionTransferTubeTemperatureOrTransferCapillaryTemperature-neg-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 350 (NEG)" + /> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon"> + High voltage (ESI) <br> Corona voltage (APCI) <small>(in kV, POS/NEG)</small> + </span> + <input + id="add1spectrum-analyzserMS-highVoltageOrCoronaVoltage-pos-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 3.5 (POS)" + /> + <input + id="add1spectrum-analyzserMS-highVoltageOrCoronaVoltage-neg-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g. 2.8 (NEG)" + /> + </div> + </div> + </div> + </div> + <div class="col-lg-6 opt-msms"> + <br> + <div class="panel panel-default"> + <div class="panel-heading"> + <h3 class="panel-title">Ion Storage / Ion Beam</h3> + </div> + <div class="panel-body"> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">Type <small>(storage / beam)</small></span> + <select id="add1spectrum-ionTrapBeam-type-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional one-or-more"> + <option value="" selected="selected" disabled="disabled">choose in list…</option> + <option value="trap">Ion Trap</option> + <option value="beam">Ion Beam</option> + </select> + </div> + <p class="help-block"> + <small> + Ion storage: Ion Trap (IT) and ICR. + <br>Ion beam: Q or H collision Cell (QQQ, QQIT, QQ/TOF, Fusion). + </small> + </p> + <div class="form-group input-group has-success"> + <span class="input-group-addon">Gas </span> + <select id="add1spectrum-ionTrapBeam-ionGas-{{ TAB_INDEX_PLACEHOLDER }}" class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional "> + <option value="He">He</option> + <option value="N2">N2</option> + <option value="Ar">Ar</option> + </select> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">Gas pressure</span> + <input + id="add1spectrum-ionTrapBeam-ionGasPressureValue-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + style="max-width: 50%;" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + /> + <select + id="add1spectrum-ionTrapBeam-ionGasPressureUnit-{{ TAB_INDEX_PLACEHOLDER }}" + style="max-width: 50%;" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + > + <option value="" selected="selected" disabled="disabled">choose in list…</option> + <option value="mbar">mbar</option> + <option value="au">a.u.</option> + </select> + </div> + <div class="form-group input-group add1spectrum-ionTrap has-warning"> + <span class="input-group-addon">Frequency Shift <small>(KHz)</small></span> + <input + id="add1spectrum-ionTrapBeam-ionFrequencyShift-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g.: ..." + /> + </div> + <div class="form-group input-group add1spectrum-ionTrap has-warning"> + <span class="input-group-addon">Ion Number <small>(AGC or ICC)</small></span> + <input + id="add1spectrum-ionTrapBeam-ionNumber-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum add1spectrum-analyzerMSForm is-optional" + placeholder="e.g.: ..." + /> + </div> + </div> + </div> + </div> + </div> + <div class="col-lg-12"> + <div class="col-lg-8"> + <br> + <button + id="btnSwitch-gotoStep4-ms-{{ TAB_INDEX_PLACEHOLDER }}" + onclick="ctx().switchToStep(4);" + class="btn btn-disabled switchStep" + disabled="" + > + <i class="fa fa-arrow-circle-down"></i> Next! + </button> + </div> + <div class="col-lg-4"> </div> + </div> + </div> + </div> + </div> + <div + id="add1spectrum-peaksData-MS-{{ TAB_INDEX_PLACEHOLDER }}" + class="panel panel-default" + style="display: none;" + > + <div class="panel-heading panel-success"> + <h4 class="panel-title"> + <a + id="linkActivateStep4-ms-{{ TAB_INDEX_PLACEHOLDER }}" + data-toggle="collapse" + data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" + href="#step4-ms-{{ TAB_INDEX_PLACEHOLDER }}" + > + MS Peaks + <i + id="step4-ms-sign-{{ TAB_INDEX_PLACEHOLDER }}" + class="fa fa-question-circle" + ></i> + </a> + </h4> + </div> + <div id="step4-ms-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse"> + <div class="panel-body"> + <div class="col-lg-12"> + <div class="form-group input-group col-lg-3 has-success"> + <span class="input-group-addon">scan type</span> + <select + style="width: 150px;" + id="add1spectrum-peaksMS-msLevel-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-mandatory" + > + <option value="" disabled="disabled">choose in list…</option> + <option class="enable-if-ms" value="ms" disabled="disabled" selected="selected">ms</option> + <option class="enable-if-msms" value="ms2" disabled="disabled">ms2</option> + <!-- <option class="enable-if-msms" value="ms3" disabled="disabled">ms3</option> --> + </select> + </div> + <div class="form-group input-group col-lg-3 has-error"> + <span class="input-group-addon">polarity</span> + <select + style="width: 150px;" + id="add1spectrum-peaksMS-polarity-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-mandatory" + > + <option value="" selected="selected" disabled="disabled">choose in list…</option> + <option value="positive" disabled="disabled">positive</option> + <option value="negative" disabled="disabled">negative</option> + </select> + </div> + <div class="form-group input-group col-lg-3 has-error"> + <span class="input-group-addon">resolution</span> + <select + style="width: 150px;" + id="add1spectrum-peaksMS-resolution-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-mandatory" + > + <option value="" disabled="disabled">choose in list…</option> + <option value="low">low</option> + <option selected="selected" value="high">high</option> + </select> + </div> + <div class="form-group input-group col-lg-3 has-success"> + <span class="input-group-addon">curation</span> + <select + style="width: 150px;" + id="add1spectrum-peaksMS-curation-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm-peaklist-reset add1spectrum-peaksMSForm is-optional" + > + <option value="no_curation" selected="selected">no curation</option> + <option value="peaks_RI_sup_1percent">Peaks RI > 1%</option> + <option value="top_50_peaks">Top 50 peaks</option> + <option value="top_20_peaks">Top 20 peaks</option> + <option value="top_10_peaks">Top 10 peaks</option> + <option value="similar_chromatographic_profile">Similar chromatographic profile</option> + </select> + </div> + </div> + <br> + <div class="col-lg-12 opt-msms"> + <hr> + <div class="form-group input-group col-lg-4 has-success"> + <span class="input-group-addon"> + Isolation mode <i class="fa fa-question-circle" title="IT / Q / TOF / ICR"></i> + </span> + <select + id="add1spectrum-peaksMS-isolationMode-{{ TAB_INDEX_PLACEHOLDER }}" + class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm is-optional add1spectrum-peaksMSForm-peaklist-reset" + > + <option value="" disabled="disabled">choose in list…</option> + <option value="IT">IT</option> + <option value="Q">Q</option> + <option value="TOF">TOF</option> + <option value="ICR">ICR</option> + </select> + </div> + <div class="form-group input-group col-lg-4 has-warning"> + <span class="input-group-addon"> + Isolation window <i class="fa fa-question-circle" title="(+ / - value)"></i> + </span> + <input + id="add1spectrum-peaksMS-isolationWindow-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional add1spectrum-peaksMSForm-peaklist-reset" + placeholder="e.g. ..." + /> + </div> + <div class="form-group input-group col-lg-4 has-warning"> + <span class="input-group-addon">qz isolation / activation <i class="fa fa-question-circle" title="if IT"></i> <small>(no unit)</small></span> + <input + id="add1spectrum-peaksMS-qzIsolation-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional add1spectrum-peaksMSForm-peaklist-reset" + placeholder="e.g. ..." + /> + </div> + <div class="form-group input-group col-lg-4 has-warning"> + <span class="input-group-addon">Activation time <i class="fa fa-question-circle" title="if FT-ICR (SORI-CID) or IT"></i> <small>(ms)</small></span> + <input + id="add1spectrum-peaksMS-activationTime-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional add1spectrum-peaksMSForm-peaklist-reset" + placeholder="e.g. ..." + /> + </div> + <div class="form-group input-group col-lg-4 has-success"> + <span class="input-group-addon"> + Mode <i class="fa fa-question-circle" title="HCD / CID / ECD /ETD"></i> + </span> + <select + id="add1spectrum-peaksMS-mode-{{ TAB_INDEX_PLACEHOLDER }}" + class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist add1spectrum-peaksMSForm is-optional" + > + <option value="" disabled="disabled">choose in list…</option> + <option value="HCD">HCD</option> + <option value="CID">CID</option> + <option value="ECD">ECD</option> + <option value="ETD">ETD</option> + </select> + </div> + + <div class="form-group input-group col-lg-4 has-warning"> + <span class="input-group-addon"> + Frag. energy <i class="fa fa-question-circle" title="without unit"></i> + </span> + <input + id="add1spectrum-peaksMS-frag-nrj-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="disabled-if-ms-in-msms form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional" + placeholder="e.g. ..." + > + </div> + </div> + <div class="col-lg-12"> + <div class="form-group input-group col-lg-4 has-warning"> + <span class="input-group-addon"> + Resolution FWHM <small>(resolution@mass)</small> + </span> + <input + id="add1spectrum-analyzer-ms-resolutionFWHM-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum add1spectrum-peaksMSForm-peaklist is-optional" + placeholder="e.g. 6500@1000" + /> + </div> + <div class="form-group input-group col-lg-4 has-error"> + <span class="input-group-addon"> + m/z range <small>(ppm) from / to</small> + </span> + <input + style="width: 100px;" + id="add1spectrum-peaksMS-rangeFrom-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory" + placeholder="50" + value="{{ DEFAULT_MIN_MZ }}" + /> + <input + style="width: 100px;" + id="add1spectrum-peaksMS-rangeTo-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory" + placeholder="500" + value="{{ DEFAULT_MAX_MZ }}" + /> + </div> + <div class="form-group input-group col-lg-4 has-error"> + <span class="input-group-addon"> + retention time (min) <small>from / to</small> + </span> + <input + style="width: 100px;" + id="add1spectrum-peaksMS-rtMinFrom-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory" + placeholder="0.9" + value="{{ DEFAULT_MIN_RT }}" + /> + <input + style="width: 100px;" + id="add1spectrum-peaksMS-rtMinTo-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-mandatory" + placeholder="1.4" + value="{{ DEFAULT_MAX_RT }}" + /> + </div> + </div> + <div class="col-lg-12"> + <div class="form-group input-group col-lg-4 has-warning"> + <span class="input-group-addon"> + retention time (% solvant) <small>from / to</small> + </span> + <input + style="width: 100px;" + id="add1spectrum-peaksMS-rtSolvFrom-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-optional" + placeholder="??" + /> + <input + style="width: 100px;" + id="add1spectrum-peaksMS-rtSolvTo-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum-peaksMSForm-peaklist add1spectrum is-optional" + placeholder="??" + /> + </div> + <div class="col-lg-4"> </div> + <div class="col-lg-4"> </div> + </div> + <div class="col-xs-12 col-lg-12"> + <ul class="nav nav-tabs" style="margin-bottom: 15px;display: block;"> + {{ TAB_LIST_PLACEHOLDER }} + </ul> + <div class="tab-content"> + {{ ADD_SPECTRUM_FORM }} + </div> + </div> + <div class="col-lg-12"> + <div class="col-lg-8"> + <button + class="btn btn-success add1spectrum" + onclick="$('#add1spectrum-peaksMS-msPrecursorIon-{{ TAB_INDEX_PLACEHOLDER }}').change()" + >check</button> + <button + id="btnSwitch-gotoStep5-ms-{{ TAB_INDEX_PLACEHOLDER }}" + onclick="$('#open_tab_1').click();setTimeout(()=>ctx().switchToStep(5), 100);" + class="btn switchStep btn-primary" + ><i class="fa fa-arrow-circle-down"></i> Next!</button> + <br> + <br> + </div> + <div class="col-lg-4"> </div> + </div> + </div> + </div> + </div> + + + <div + id="add1spectrum-otherData-{{ TAB_INDEX_PLACEHOLDER }}" + class="panel panel-default" + style="display: none;" + > + <div class="panel-heading panel-success"> + <h4 class="panel-title"> + <a id="linkActivateStep5-{{ TAB_INDEX_PLACEHOLDER }}" data-toggle="collapse" data-parent="#accordion-{{ TAB_INDEX_PLACEHOLDER }}" href="#step5-{{ TAB_INDEX_PLACEHOLDER }}"> + Other <i id="step5sign-{{ TAB_INDEX_PLACEHOLDER }}" class="fa fa-question-circle"></i> + </a> + </h4> + </div> + <div id="step5-{{ TAB_INDEX_PLACEHOLDER }}" class="panel-collapse collapse"> + <div class="panel-body"> + <div class="col-lg-12"> + <div class="col-lg-6"> + <div class="panel panel-default"> + <div class="panel-heading"> + <h3 class="panel-title">Ownership</h3> + </div> + <div class="panel-body"> + <div class="form-group input-group has-error"> + <span class="input-group-addon">data author(s)</span> + <input + id="add1spectrum-other-author-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum add1spectrum-otherForm is-mandatory" + placeholder="enter your lab. / plateforme name" + value="" + /> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">data validator(s)</span> + <input + id="add1spectrum-other-validator-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum add1spectrum-otherForm is-optional" + placeholder="name of the personne who checked all data in this file" + /> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">acquisition date</span> + <input + id="add1spectrum-other-date-{{ TAB_INDEX_PLACEHOLDER }}" + data-date-format="yyyy-mm-dd" + type="text" + class="form-control add1spectrum add1spectrum-otherForm datepicker is-optional" + value="" + placeholder="2022-11-04" + /> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">data ownership</span> + <input + id="add1spectrum-other-owner-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum add1spectrum-otherForm is-optional" + placeholder="enter your lab. / plateforme name & sample provider;" + /> + </div> + </div> + </div> + </div> + <div class="col-lg-6"> + <div class="panel panel-default"> + <div class="panel-heading"> + <h3 class="panel-title">Raw File</h3> + </div> + <div class="panel-body"> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">raw file name</span> + <input + id="add1spectrum-other-fileName-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum add1spectrum-otherForm is-optional" + placeholder="needed to retrieve file later" + /> + </div> + <div class="form-group input-group has-warning"> + <span class="input-group-addon">raw file size (Ko)</span> + <input + id="add1spectrum-other-fileSize-{{ TAB_INDEX_PLACEHOLDER }}" + type="text" + class="form-control add1spectrum add1spectrum-otherForm is-optional" + placeholder="optional, to check if the file is correct" + /> + </div> + </div> + </div> + </div> + </div> + <div class="col-lg-12"> + <div class="col-lg-8"> + <br> + <button + id="btnSwitch-gotoStep6-{{ TAB_INDEX_PLACEHOLDER }}" + onclick="ctx().switchToStep(6);" + class="btn btn-disabled switchStep" + disabled="" + > + <i class="fa fa-arrow-circle-right"></i> Validate this compound/mix! + </button> + <span + id="import1SpectrumLoadingBare-{{ TAB_INDEX_PLACEHOLDER }}" + style="display: none;"><img + src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/img/ajax-loader.gif" + title="please wait" + ></span> + <span + id="import1SpectrumResults-{{ TAB_INDEX_PLACEHOLDER }}" + style="display: none;" + > + <button + id="btnSwitch-view-{{ TAB_INDEX_PLACEHOLDER }}" + data-toggle="modal" + data-target="#modalShowSpectra-{{ TAB_INDEX_PLACEHOLDER }}" + class="btn btn-success" + > + <i class="fa fa-eye"></i> View spectrum + </button> + <button + id="btnSwitch-returntoStep3-{{ TAB_INDEX_PLACEHOLDER }}" + onclick="ctx().switchToStep(3);" + class="btn btn-primary" + > + <i class="fa fa-arrow-circle-up"></i> Add new peaklist! + </button> + </span> + </div> + <div class="col-lg-4"> + <br> + <br> + <br> + </div> + </div> + <div class="col-lg-12"> + <div class="col-lg-8"> + <div + id="alertBoxSubmitSpectrum-{{ TAB_INDEX_PLACEHOLDER }}" + class="col-lg-6" + ></div> + </div> + <div class="col-lg-4"> </div> + </div> + </div> + </div> + </div> + <script src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/handsontable/dist/handsontable.full.min.js"></script> + <link + rel="stylesheet" + media="screen" + href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/handsontable/dist/handsontable.full.min.css" + > + <link + rel="stylesheet" + media="screen" + href="{{ PF_URL_PLACEHOLDER }}/webapp/resources/handsontable/bootstrap/handsontable.bootstrap.min.css" + > + <div + class="modal" + id="modalPickCompound-{{ TAB_INDEX_PLACEHOLDER }}" + tabindex="-1" + role="dialog" + aria-labelledby="modalPickCompoundLabel-{{ TAB_INDEX_PLACEHOLDER }}" + aria-hidden="true" + > + <div class="modal-dialog"> + <div class="modal-content"> + <div class="modal-header"> + <button + type="button" + class="close" + data-dismiss="modal" + aria-hidden="true" + >×</button> + <h4 + class="modal-title" + id="modalPickCompoundLabel-{{ TAB_INDEX_PLACEHOLDER }}" + > + Pick a compound + </h4> + </div> + <div class="modal-body"> + <div class="form-group input-group"> + <span class="input-group-addon">Compound Name</span> + <input + id="add-one-cc-s1-value-{{ TAB_INDEX_PLACEHOLDER }}" + class="form-control" + placeholder="e.g. Caffeine" + type="text" + /> + <span class="input-group-btn"> + <button + class="btn btn-default" + type="button" + onclick="ctx().searchLocalCompound();" + > + <i class="fa fa-search"></i> + </button> + </span> + </div> + <div id="load-step-1-{{ TAB_INDEX_PLACEHOLDER }}" style="display: none;"> + <img src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/img/ajax-loader.gif" title="please wait"> + </div> + <div + id="ok-step-1-{{ TAB_INDEX_PLACEHOLDER }}" + style="overflow: auto; max-height: 300px;" + ></div> + </div> + <div class="modal-footer"> + <button + type="button" + class="btn btn-danger" + data-dismiss="modal" + onclick="ctx().clearLine()" + > + <i class="fa fa-eraser"></i> Clear + </button> + <button + type="button" + class="btn btn-default" + data-dismiss="modal" + >Fermer</button> + </div> + </div> + </div> + </div> + <div + class="modal " + id="modalShowSpectra-{{ TAB_INDEX_PLACEHOLDER }}" + tabindex="-1" + role="dialog" + aria-labelledby="modalShowSpectraLabel-{{ TAB_INDEX_PLACEHOLDER }}" + aria-hidden="true" + > + <div class="modal-dialog"> + <div class="modal-content"> + <div class="modal-header"> + <button + type="button" + class="close" + data-dismiss="modal" + aria-hidden="true" + >×</button> + <h4 + class="modal-title" + id="modalShowSpectraLabel-{{ TAB_INDEX_PLACEHOLDER }}" + >Modal title</h4> + </div> + <div class="modal-body"> + <div class="te"></div> + </div> + <div class="modal-footer"> + </div> + </div> + </div> + </div> + </div> + </div> + </div> + <div> + <button + onclick="send_everything_to_peakforest('{{ PF_URL_PLACEHOLDER }}', '{{ PF_TOKEN_PLACEHOLDER }}')" + class="btn btn-success" + > + <i class="fa fa-arrow-circle-right"></i> + Send everything to peakforest! + </button> + <button class="btn btn-validate" onclick="ctx().exit()"> + Close MS2PF + </button> + </div> + <script + type="text/javascript" + src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/jqueryform/2.8/jquery.form.min.js" + ></script> + <script + src="{{ PF_URL_PLACEHOLDER }}/webapp/resources/js/md5.min.js" + ></script> + </div> + <nav class="navbar navbar-default navbar-fixed-bottom navbar-inverse navbar-main" role="navigation"> + <div class="navbar-header navbar-inverse footer"> + <ul id="ul-info-footer" class="nav navbar-nav"> + <li class="li-info-footer"><a id="linkcontact" href="mailto:contact@peakforest.org?subject=%5Babout%20peakforest%20webapp%5D">Contact</a></li> + <li class="li-info-footer"> + <a id="about-peakforest" href="about-peakforest" data-toggle="modal" data-target="#modalAbout">À propos</a> + </li> + <li class="li-info-footer"> + <a href="https://peakforest.org/mypeakforest" target="_blank">Ma PeakForest</a> + </li> + <li class="li-info-footer"> + <a href="http://metabohub.fr" target="_blank">metaboHUB</a> + </li> + </ul> + </div> + </nav> + <div + class="modal" + id="modalAbout" + tabindex="-1" + role="dialog" + aria-labelledby="modalAboutLabel" + aria-hidden="true" + > + <div class="modal-dialog"> + <div class="modal-content"> + <div class="modal-header"> + <button + type="button" + class="close" + data-dismiss="modal" + aria-hidden="true" + >×</button> + <h4 class="modal-title" id="modalAboutLabel">À propos de la Base de Données PeakForest</h4> + </div> + <div class="modal-body"> + <div class="te"></div> + </div> + <div class="modal-footer"> + </div> + </div> + </div> + </div> + <div + class="modal" + id="modalMyPeakForest" + tabindex="-1" + role="dialog" + aria-labelledby="modalMyPFLabel" + aria-hidden="true" + > + <div class="modal-dialog"> + <div class="modal-content"> + <div class="modal-header"> + <button type="button" class="close" data-dismiss="modal" aria-hidden="true">×</button> + <h4 class="modal-title" id="modalAboutLabel">Ma base de Données PeakForest</h4> + </div> + <div class="modal-body"> + <div class="te"></div> + </div> + <div class="modal-footer"> + </div> + </div> + </div> + </div> + {{ EMBED_JS }} + <script type="text/javascript">context = context_1 ;</script> + </body> +</html> \ No newline at end of file