comparison XSeeker.xml @ 6:adff2b3bc192 draft default tip

" master branch Updating"

5:98f0178217b0

<tool id="interactive_tool_xseeker" tool_type="interactive" name="xseeker" version="@TOOL_VERSION@+@GALAXY_PREFIX@">
    <description>Visualization and annotation of LC-MSMS data tool</description>
    <macros>
        <token name="@TOOL_VERSION@">1.5.0</token>
        <token name="@GALAXY_PREFIX@">0</token>
    </macros>
    <requirements>
        <container type="docker">quay.io/pfem/xseeker:@TOOL_VERSION@</container>
    </requirements>

                #end for
            #end if
        </environment_variable>
        <environment_variable name="DOCKER">TRUE</environment_variable>
    </environment_variables>
    <command><![CDATA[
        ln -s ${infile} /XSeeker/input/test.sqlite
        &&  /entrypoint.sh
    ]]>
    </command>
    <inputs>
        <param name="infile" type="data" format="binary"
            label="An sqlite file processed by XSeeker Preprocessor"
        />
    </inputs>
    <outputs>
        <data name="outfile" format="txt" />
    </outputs>
    <tests>
    </tests>
    <help>
<![CDATA[

6:adff2b3bc192

<tool id="interactive_tool_xseeker" tool_type="interactive" name="xseeker" version="@TOOL_VERSION@+@GALAXY_PREFIX@">
    <description>Visualization and annotation of LC-MSMS data tool</description>
    <macros>
        <token name="@TOOL_VERSION@">1.5.1</token>
        <token name="@GALAXY_PREFIX@">0</token>
    </macros>
    <requirements>
        <container type="docker">quay.io/pfem/xseeker:@TOOL_VERSION@</container>
    </requirements>

                #end for
            #end if
        </environment_variable>
        <environment_variable name="DOCKER">TRUE</environment_variable>
    </environment_variables>
    <command detect_errors="exit_code"><![CDATA[
        cp ${infile} ${outfile}
        && ln -s ${outfile} /XSeeker/input/test.sqlite
        &&  /entrypoint.sh
    ]]>
    </command>
    <inputs>
        <param name="infile" type="data" format="binary"
            label="An sqlite file processed by XSeeker Preprocessor"
        />
    </inputs>
    <outputs>
        <data name="outfile" format="sqlite" />
    </outputs>
    <tests>
    </tests>
    <help>
<![CDATA[