annotate test/test.sh @ 0:a174cbbb12dd draft

" master branch Updating"
author lain
date Tue, 24 Nov 2020 18:55:08 +0000
parents
children 5be8a770a11d
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
1 #!/bin/sh
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
2
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
3 currdir=`pwd`
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
4 cd `dirname $(readlink -f $0)`
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
5
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
6 ln -s ../data/ ./data
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
7
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
8 ~/R/bin/Rscript $(realpath ../XSeekerPreparator.R) \
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
9 -i $(realpath ../data/full.rdata) \
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
10 -m $(realpath ../data/models.R) \
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
11 -c $(realpath ../data/SERUM_v2019Jan17.tabular) \
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
12 -o $(realpath ../test.sqlite) \
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
13 || true
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
14
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
15
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
16
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
17 rm -rf "./data"
a174cbbb12dd " master branch Updating"
lain
parents:
diff changeset
18 cd "${currdir}"