comparison XSeekerPreparator.xml @ 3:fa97d16330be draft

" master branch Updating"

2:eb7756ab1cbd

<tool id="xseeker_preparator"
      name="XSeeker Preparator"
      version="1.0.1"
      profile="20.04"
>
    <description>Prepare RData file from CAMERA to be visualized in XSeeker</description>
    
    <edam_operations>
        <edam_operation>operation_1812</edam_operation>
        <edam_operation>operation_0335</edam_operation>
    </edam_operations>
    
    <requirements>
        <requirement type="set_environment">R_SCRIPT_PATH</requirement>
        <requirement type="package" version="4.0.0">R</requirement>
        <requirement type="package" version="1.6.6">optparse</requirement>
        <requirement type="package" version="3.10.2">xcms</requirement>
        <requirement type="package" version="1.2.1">blob</requirement>
        <requirement type="package" version="0.9.4">fst</requirement>

        />

    </stdio>

    <version_command>
        R_SCRIPT_PATH '$__tool_directory__/XSeekerPreparator.R' -v
    </version_command>

    <command>
        <![CDATA[

            R_SCRIPT_PATH '$__tool_directory__/XSeekerPreparator.R'

                -P

                --input '$input'
                --output '$output'

        </section>
    </inputs>


    <outputs>
        <data format="xseeker.sqlite" name="output" />
    </outputs>

    <configfiles>
        <configfile name="base_config">
tryCatch({

3:fa97d16330be

<tool id="xseeker_preparator"
      name="XSeeker Preparator"
      version="1.0.1"
>
    <description>Prepare RData file from CAMERA to be visualized in XSeeker</description>
    
    <edam_operations>
        <edam_operation>operation_1812</edam_operation>
        <edam_operation>operation_0335</edam_operation>
    </edam_operations>
    
    <requirements>
        <requirement type="set_environment">R_SCRIPT</requirement>
        <requirement type="package" version="4.0.0">R</requirement>
        <requirement type="package" version="1.6.6">optparse</requirement>
        <requirement type="package" version="3.10.2">xcms</requirement>
        <requirement type="package" version="1.2.1">blob</requirement>
        <requirement type="package" version="0.9.4">fst</requirement>

        />

    </stdio>

    <version_command>
        $R_SCRIPT '$__tool_directory__/XSeekerPreparator.R' -v
    </version_command>

    <command>
        <![CDATA[
            $R_SCRIPT '$__tool_directory__/XSeekerPreparator.R'

                -P

                --input '$input'
                --output '$output'

        </section>
    </inputs>


    <outputs>
        <data format="sqlite" name="output" />
    </outputs>

    <configfiles>
        <configfile name="base_config">
tryCatch({