Mercurial > repos > laurenmarazzi > netisce_test
annotate tools/myTools/bin/get_perts.py @ 1:7e5c71b2e71f draft default tip
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| author | laurenmarazzi |
|---|---|
| date | Wed, 22 Dec 2021 16:00:34 +0000 |
| parents | |
| children |
| rev | line source |
|---|---|
| 1 | 1 #!/usr/bin/env python3 |
| 2 | |
| 3 import pandas as pd | |
| 4 import sys | |
| 5 | |
| 6 def main(): | |
| 7 | |
| 8 FC_perts=pd.read_csv(sys.argv[1], delim_whitespace=True) | |
| 9 FC_nodes=open(sys.argv[2]).read().strip().split('\n')[1:] # FC set | |
| 10 extracts_file=pd.read_csv(sys.argv[3], delim_whitespace=True,index_col=0) | |
| 11 extracts=extracts_file.perturbation.unique() | |
| 12 FC_perts.columns=FC_nodes #set index for FC nodes | |
| 13 df1=FC_perts.loc[extracts,:] | |
| 14 df1.to_csv("extracted_perts.txt",sep=' ',index_label="name",na_rep='NA') | |
| 15 main() |