Mercurial > repos > laurenmarazzi > netisce_test
diff tools/myTools/12_extract_perts.xml @ 1:7e5c71b2e71f draft default tip
Uploaded
author | laurenmarazzi |
---|---|
date | Wed, 22 Dec 2021 16:00:34 +0000 |
parents | |
children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/myTools/12_extract_perts.xml Wed Dec 22 16:00:34 2021 +0000 @@ -0,0 +1,39 @@ +<tool id="netisce12" name="Netisce Step 12" version="0.1.0" python_template_version="3.5"> +<description>Extracts the combinations of perturbations on FVS control nodes that pass filtering criterion 2</description> + + <requirements> + <requirement type="package" version="1.1.5">pandas</requirement> + <requirement type="package" version="3.5.0">sys</requirement> + </requirements> + + <command> python3 '$__tool_directory__/bin/get_perts.py' '$fvs_init' '$fvs' '$filtered_perts' </command> + + <inputs> + <param name="fvs_init" type="data" format="txt" label="FVS perturbations initialization"/> + <param name="fvs" type="data" format="txt" label="Minimal Feedback Vertex Set"/> + <param name="filtered_perts" type="data" format="txt" label="list of perturbation IDs that passed filtering criterion 2. "/> + + </inputs> + + <outputs> + <data name="output" format="txt" from_work_dir="extracted_perts.txt" label="combinations of perturbations on FVS control nodes that pass filtering criterion 2."/> + </outputs> + + <tests> + <test> + <param name="fvs_init" value="init.txt"/> + <param name="fvs" value="fvs.txt"/> + <param name="filtered_perts" value="crit2_perturbations.txt"/> + <output name="output" value="extract_perts.txt" ftype="txt" /> + </test> + </tests> + + <help> + This tool extracts the combinations of perturbations on FVS control nodes that pass filtering criterion 2. + Required Inputs: + 1. Random Perturbation States for Feedback Vertex Set + 2. Feedback Vertex Set + 3. Perturbation Attractors that successfully shifted the network from undesired to desired state + </help> + +</tool> \ No newline at end of file