Mercurial > repos > laurenmarazzi > netisce_test
diff tools/myTools/bin/get_perts.py @ 1:7e5c71b2e71f draft default tip
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author | laurenmarazzi |
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date | Wed, 22 Dec 2021 16:00:34 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/myTools/bin/get_perts.py Wed Dec 22 16:00:34 2021 +0000 @@ -0,0 +1,15 @@ +#!/usr/bin/env python3 + +import pandas as pd +import sys + +def main(): + + FC_perts=pd.read_csv(sys.argv[1], delim_whitespace=True) + FC_nodes=open(sys.argv[2]).read().strip().split('\n')[1:] # FC set + extracts_file=pd.read_csv(sys.argv[3], delim_whitespace=True,index_col=0) + extracts=extracts_file.perturbation.unique() + FC_perts.columns=FC_nodes #set index for FC nodes + df1=FC_perts.loc[extracts,:] + df1.to_csv("extracted_perts.txt",sep=' ',index_label="name",na_rep='NA') +main() \ No newline at end of file