diff tools/myTools/bin/sfa/data/fumia_2013/__init__.py @ 1:7e5c71b2e71f draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/myTools/bin/sfa/data/fumia_2013/__init__.py	Wed Dec 22 16:00:34 2021 +0000
@@ -0,0 +1,55 @@
+# -*- coding: utf-8 -*-
+
+"""
+[Reference]
+Fumiã, H. F., & Martins, M. L. 
+Boolean Network Model for Cancer Pathways: Predicting 
+Carcinogenesis and Targeted Therapy Outcomes.
+PLoS ONE, (2013) 8(7), e69008
+
+"""
+
+import os
+
+import pandas as pd
+
+import sfa
+import sfa.base
+
+
+def create_data():
+    return FumiaData()
+
+
+class FumiaData(sfa.base.Data):
+
+    def __init__(self):
+
+        self._abbr = "fumia_2013"
+        self._name = "Fumiã et al. PLoS ONE, (2013) 8(7), e69008"
+        inputs = {}
+        inputs['Mutagen'] = 1.0
+        inputs['GFs'] = 1.0
+        inputs['Nutrients'] = 1.0
+        inputs['TNFα'] = 0.0
+        inputs['Hypoxia'] = 1.0
+
+        dpath = os.path.dirname(__file__)
+        fpath_network = os.path.join(dpath, 'network.sif')
+        A, n2i, dg = sfa.read_sif(fpath_network, as_nx=True)
+        self._A = A
+        self._n2i = n2i
+        self._i2n = {idx: name for name, idx in n2i.items()}
+        self._dg = dg
+        self._inputs = inputs
+
+        # The following members are not defined due to the lack of data.
+        self._df_conds = None
+        self._df_exp = None
+        self._df_ptb = None
+        self._has_link_perturb = False
+        self._names_ptb = None
+        self._iadj_to_idf = None
+    # end of def __init__
+# end of def class
+