diff tools/myTools/bin/get_perts.py @ 1:7e5c71b2e71f draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/myTools/bin/get_perts.py	Wed Dec 22 16:00:34 2021 +0000
@@ -0,0 +1,15 @@
+#!/usr/bin/env python3
+
+import pandas as pd
+import sys
+
+def main():
+
+    FC_perts=pd.read_csv(sys.argv[1], delim_whitespace=True)
+    FC_nodes=open(sys.argv[2]).read().strip().split('\n')[1:]   # FC set
+    extracts_file=pd.read_csv(sys.argv[3], delim_whitespace=True,index_col=0)
+    extracts=extracts_file.perturbation.unique()
+    FC_perts.columns=FC_nodes #set index for FC nodes
+    df1=FC_perts.loc[extracts,:]
+    df1.to_csv("extracted_perts.txt",sep=' ',index_label="name",na_rep='NA')
+main()
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