Mercurial > repos > laurenmarazzi > netisce_test
view tools/myTools/10_internal_control_node_analysis.xml @ 1:7e5c71b2e71f draft default tip
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author | laurenmarazzi |
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date | Wed, 22 Dec 2021 16:00:34 +0000 |
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<tool id="netisce10" name="Netisce Step 10" version="0.1.0" python_template_version="3.5"> <description>Extracts the steady-state values of internal-marker nodes in the attractors from perturbations whose attractors passed filtering criterion 1</description> <requirements> <requirement type="package" version="1.1.5">pandas</requirement> <requirement type="package" version="3.5.0">sys</requirement> </requirements> <command> python3 '$__tool_directory__/bin/get_RONs_getperts.py' '$pert_attrs' '$icn' '$crit_perts'</command> <inputs> <param name="pert_attrs" type="data" format="txt" label="Perturbation Attractors"/> <param name="crit_perts" type="data" format="txt" label="Perturbation Attractors that shifted to a different state/cluster"/> <param name="icn" type="data" format="txt" label="Internal Control Nodes"/> </inputs> <outputs> <data name="output" format="txt" from_work_dir="internal_markers.txt" label="internal-marker nodes in attracotrs from perturbations that passed criterion 1"/> </outputs> <tests> <test> <param name="icn" value="internal_control.txt"/> <param name="pert_attrs" value="pert_logss.txt"/> <param name="crit_perts" value="crit1perts.txt"/> <output name="output" value="internal_markers.txt" ftype="txt"/> </test> </tests> <help> This tool extracts the steady-state values of internal-marker nodes in the attractors from perturbations whose attractors passed filtering criterion 1. Required Inputs: 1. Perturbation Attractors 2. Perturbation Attractors IDs that shifted to a different state/cluster 3. Internal Control Nodes </help> </tool>