Mercurial > repos > laurenmarazzi > netisce_test
view tools/myTools/2_get_exp_internal_control_nodes.xml @ 1:7e5c71b2e71f draft default tip
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author | laurenmarazzi |
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date | Wed, 22 Dec 2021 16:00:34 +0000 |
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<tool id="netisce2" name="Netisce Step 2" version="0.1.0" python_template_version="3.5"> <description>Extracts Internal-marker node values from attractors generated from experimental data</description> <requirements> <requirement type="package" version="1.1.5">pandas</requirement> <requirement type="package" version="3.5.0">sys</requirement> </requirements> <command>python3 '$__tool_directory__/bin/get_RONs.py' '$attrs_exp' '$icn' </command> <inputs> <param name="icn" type="data" format="txt" label="Internal Control Nodes"/> <param name="attrs_exp" type="data" format="tabular" label="Experimental Attractors"/> </inputs> <outputs> <data name="output" format="tabular" from_work_dir="exp_internalmarkers.tsv" label="Internal-marker nodes from experimental attractors"/> </outputs> <tests> <test expect_num_outputs="1"> <param name="attrs_exp" value="attrs_exp.tsv" /> <param name="icn" value="internal_control.txt" /> <output name="output" file="exp_internalmarkers.tsv" ftype="tsv" /> </test> </tests> <help> This tool extracts Internal-marker node values from attractors generated from experimental data. Required Inputs: 1. output from netisce step 1 2. internal control nodes in txt format </help> </tool>