view tools/myTools/5_perturbation_inits.xml @ 1:7e5c71b2e71f draft default tip

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<tool id="netisce5" name="Netisce Step 5" version="0.1.0" python_template_version="3.5">
<description>Generates combinations of perturbations for FVS control nodes</description>

    <requirements>
        <requirement type="package" version="1.19.5">numpy</requirement>
        <requirement type="package" version="1.1.5">pandas</requirement>
        <requirement type="package" version="3.5.0">os</requirement>
        <requirement type="package" version="3.5.0">itertools</requirement>
        <requirement type="package" version="3.5.0">csv</requirement>
        <requirement type="package" version="3.5.0">sys</requirement>
    </requirements>

    <command>python3 '$__tool_directory__/bin/generate_perts.py' '$fvs' 'pert' '-1,0,1'</command>

    <inputs>
        <param name="fvs" type="data" format="txt" label="Minimal Feedback Vertex Set"/>
        <!-- <param name="prefix" type="text" value="pert" label="Prefix for Output File"/>
        <param name="states" type="text" value="-1,0,1" label="States of a node"/> -->
    </inputs>

    <outputs>
        <data name="output" format="txt" from_work_dir="init.txt" label="Combinations of Perturbations of the FVS Set"/>
    </outputs>

    <tests>
        <test>
            <param name="fvs" value="fvs.txt" />
            <param name="prefix" value="pert" />
            <param name="states" value="-1,0,1" />
            <output name="output" value="init.txt" ftype="txt"/>
        </test>
    </tests>

    <help>
    This tool Generates combinations of perturbations for FVS control nodes.
    Required Inputs:
    1. minimal Feedbfack Vertex Set in txt format (from 4_getFVS)
    </help>

</tool>