Mercurial > repos > laurenmarazzi > netisce_test
view tools/myTools/5_perturbation_inits.xml @ 1:7e5c71b2e71f draft default tip
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author | laurenmarazzi |
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date | Wed, 22 Dec 2021 16:00:34 +0000 |
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<tool id="netisce5" name="Netisce Step 5" version="0.1.0" python_template_version="3.5"> <description>Generates combinations of perturbations for FVS control nodes</description> <requirements> <requirement type="package" version="1.19.5">numpy</requirement> <requirement type="package" version="1.1.5">pandas</requirement> <requirement type="package" version="3.5.0">os</requirement> <requirement type="package" version="3.5.0">itertools</requirement> <requirement type="package" version="3.5.0">csv</requirement> <requirement type="package" version="3.5.0">sys</requirement> </requirements> <command>python3 '$__tool_directory__/bin/generate_perts.py' '$fvs' 'pert' '-1,0,1'</command> <inputs> <param name="fvs" type="data" format="txt" label="Minimal Feedback Vertex Set"/> <!-- <param name="prefix" type="text" value="pert" label="Prefix for Output File"/> <param name="states" type="text" value="-1,0,1" label="States of a node"/> --> </inputs> <outputs> <data name="output" format="txt" from_work_dir="init.txt" label="Combinations of Perturbations of the FVS Set"/> </outputs> <tests> <test> <param name="fvs" value="fvs.txt" /> <param name="prefix" value="pert" /> <param name="states" value="-1,0,1" /> <output name="output" value="init.txt" ftype="txt"/> </test> </tests> <help> This tool Generates combinations of perturbations for FVS control nodes. Required Inputs: 1. minimal Feedbfack Vertex Set in txt format (from 4_getFVS) </help> </tool>