view tools/myTools/bin/FVS_run.py @ 1:7e5c71b2e71f draft default tip

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#!/usr/bin/env python3

import networkx as nx
import random
from FVS_python3 import FVS as FVS
import re
import csv
import sys

outputfile=open('fvs.txt','w+')
edges=open(sys.argv[1]).readlines() #open network file
data1=[(line.strip().split()[0],line.strip().split()[1],line.strip().split()[2]) for line in edges] 
for elem in data1:
    if elem[0]==elem[2]:
        if elem[1]=="inhibits":
            data1.remove(elem)
data=[tuple([line[0],line[2]]) for line in data1] #creates tuple from file
G3=nx.DiGraph()
G3.add_edges_from(data)

G3_FVS1=FVS.FVS(G3, T_0=0.6, alpha=0.99, maxMvt_factor=5, maxFail=10,randomseed=1)
G3_FVS1.sort()

outputfile.write('name'+'\n')
outputfile.write("\n".join(map(str, G3_FVS1)))

outputfile.close()