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# -*- coding: utf-8 -*-

"""
[Reference]
Flobak, Å., Baudot, A., Remy, E., Thommesen, L., Thieffry, D., Kuiper, M., & Laegreid, A.
Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling.
PLoS Comput Biol, (2015) 11(8).
"""

import os

import pandas as pd

import sfa
import sfa.base


def create_data():
    return FlobakData()


class FlobakData(sfa.base.Data):

    def __init__(self):

        self._abbr = "flobak_2015"
        self._name = "Flobak et al. PLoS Comput Biol, (2015) 11(8)"
        inputs = {}

        dpath = os.path.dirname(__file__)
        fpath_network = os.path.join(dpath, 'network.sif')
        A, n2i, dg = sfa.read_sif(fpath_network, as_nx=True)
        self._A = A
        self._n2i = n2i
        self._i2n = {idx: name for name, idx in n2i.items()}
        self._dg = dg
        self._inputs = inputs

        # The following members are not defined due to the lack of data.
        self._df_conds = None
        self._df_exp = None
        self._df_ptb = None
        self._has_link_perturb = False
        self._names_ptb = None
        self._iadj_to_idf = None
    # end of def __init__
# end of def class