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view tools/myTools/12_extract_perts.xml @ 1:7e5c71b2e71f draft default tip
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author | laurenmarazzi |
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date | Wed, 22 Dec 2021 16:00:34 +0000 |
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<tool id="netisce12" name="Netisce Step 12" version="0.1.0" python_template_version="3.5"> <description>Extracts the combinations of perturbations on FVS control nodes that pass filtering criterion 2</description> <requirements> <requirement type="package" version="1.1.5">pandas</requirement> <requirement type="package" version="3.5.0">sys</requirement> </requirements> <command> python3 '$__tool_directory__/bin/get_perts.py' '$fvs_init' '$fvs' '$filtered_perts' </command> <inputs> <param name="fvs_init" type="data" format="txt" label="FVS perturbations initialization"/> <param name="fvs" type="data" format="txt" label="Minimal Feedback Vertex Set"/> <param name="filtered_perts" type="data" format="txt" label="list of perturbation IDs that passed filtering criterion 2. "/> </inputs> <outputs> <data name="output" format="txt" from_work_dir="extracted_perts.txt" label="combinations of perturbations on FVS control nodes that pass filtering criterion 2."/> </outputs> <tests> <test> <param name="fvs_init" value="init.txt"/> <param name="fvs" value="fvs.txt"/> <param name="filtered_perts" value="crit2_perturbations.txt"/> <output name="output" value="extract_perts.txt" ftype="txt" /> </test> </tests> <help> This tool extracts the combinations of perturbations on FVS control nodes that pass filtering criterion 2. Required Inputs: 1. Random Perturbation States for Feedback Vertex Set 2. Feedback Vertex Set 3. Perturbation Attractors that successfully shifted the network from undesired to desired state </help> </tool>