Mercurial > repos > laurenmarazzi > netisce_test
view tools/myTools/4_getFVS.xml @ 1:7e5c71b2e71f draft default tip
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author | laurenmarazzi |
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date | Wed, 22 Dec 2021 16:00:34 +0000 |
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<tool id="netisce4" name="Netisce Step 4" version="0.1.0" python_template_version="3.5"> <description>Computes the minimal Feedback Vertex Set of the network</description> <requirements> <requirement type="package" version="1.11.0">networkx</requirement> <requirement type="package" version="3.5.0">random</requirement> <requirement type="package" version="1.0.0">FVS_python3</requirement> <requirement type="package" version="3.5.0">re</requirement> <requirement type="package" version="3.5.0">csv</requirement> <requirement type="package" version="3.5.0">sys</requirement> </requirements> <command>python3 '$__tool_directory__/bin/FVS_run.py' '$network' fvs.txt</command> <inputs> <param name="network" type="data" format="sif" label="Network"/> </inputs> <outputs> <data name="output" format="txt" from_work_dir="fvs.txt" label="Feedback Vertex Set"/> </outputs> <tests> <test> <param name="network" value="network.sif" /> <output name="output" value="fvs.txt" /> </test> </tests> <help> This tool computes the minimal Feedback Vertex Set using Control Systems theory and the topological features of the network. Required Inputs: 1. network in sif format (activating edges as "activates", inhibitory edges as "inhibits") </help> </tool>