Mercurial > repos > lcottret > met4j
annotate tools/networkAnalysis/ScopeNetwork/test-data/toy_model.xml @ 0:3cdcfdae8bd2 draft default tip
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
author | lcottret |
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date | Tue, 31 May 2022 07:45:16 +0000 |
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3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
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1 <?xml version="1.0" encoding='UTF-8' ?> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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2 <sbml fbc:required="false" groups:required="false" level="3" version="1" |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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3 xmlns="http://www.sbml.org/sbml/level3/version1/core" |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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4 xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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5 xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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6 <model fbc:strict="true" name="toy model"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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7 <listOfUnitDefinitions> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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8 <unitDefinition id="mmol_per_gDW_per_hr" name="mmol_per_gDW_per_hr"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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9 <listOfUnits> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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10 <unit exponent="-1" kind="gram" multiplier="1" scale="0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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11 <unit exponent="1" kind="mole" multiplier="1" scale="-3"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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12 <unit exponent="-1" kind="second" multiplier="0.00027777" scale="0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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13 </listOfUnits> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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14 </unitDefinition> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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15 </listOfUnitDefinitions> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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16 <listOfCompartments> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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17 <compartment constant="false" id="c" name="Cytosol"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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18 <compartment constant="false" id="e" name="Extracellular"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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19 </listOfCompartments> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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20 <listOfSpecies> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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21 <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="A_ext" name="A_ext"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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22 <notes> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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23 <body xmlns="http://www.w3.org/1999/xhtml"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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24 <p>SMILES: C[C@@H](C(=O)O)NC</p> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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25 </body> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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26 </notes> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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27 <annotation> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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29 xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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30 <rdf:Description rdf:about="#A_ext"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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31 <bqbiol:is> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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32 <in:inchi xmlns:in="https://biomodels.net/inchi">InChI=1S/C2H6O/c1-2-3/h3H,2H2,1H3</in:inchi> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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33 </bqbiol:is> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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34 </rdf:Description> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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35 </rdf:RDF> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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36 </annotation> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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37 |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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38 </species> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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39 <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="A" name="A"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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40 <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="B" name="B"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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41 <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="C" name="C"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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42 <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="D" name="D"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
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43 <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="D_ext" name="D_ext"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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44 <species boundaryCondition="false" compartment="e" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="E_ext" name="E_ext"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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45 <species boundaryCondition="false" compartment="c" constant="false" fbc:charge="0" hasOnlySubstanceUnits="false" id="E" name="E"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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46 </listOfSpecies> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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47 <listOfParameters> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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48 <parameter constant="true" id="cobra_default_lb" name="cobra default - lb" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="-100000.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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49 <parameter constant="true" id="cobra_default_ub" name="cobra default - ub" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="100000.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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50 <parameter constant="true" id="cobra_0_bound" name="cobra 0 - bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="0.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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51 <parameter constant="true" id="reac1_upper_bound" name="reac1 upper bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="10.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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52 <parameter constant="true" id="reac6_upper_bound" name="reac6 upper bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="3.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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53 <parameter constant="true" id="reac2_upper_bound" name="reac2 upper bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="100000.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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54 <parameter constant="true" id="reac3_upper_bound" name="reac3 upper bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="100000.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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55 <parameter constant="true" id="reac4_upper_bound" name="reac4 upper bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="100000.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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56 <parameter constant="true" id="reac5_upper_bound" name="reac5 upper bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="100000.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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57 <parameter constant="true" id="reac7_upper_bound" name="reac7 upper bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="100000.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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58 </listOfParameters> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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59 <listOfReactions> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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60 <reaction fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="reac1_upper_bound" id="reac1" name="reac1" reversible="false"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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61 <listOfReactants> |
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"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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62 <speciesReference constant="true" species="A_ext" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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63 </listOfReactants> |
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"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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64 <listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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65 <speciesReference constant="true" species="A" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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66 </listOfProducts> |
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"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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67 </reaction> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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68 <reaction fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="reac2_upper_bound" id="reac2" name="reac2" reversible="true"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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69 <listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
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70 <speciesReference constant="true" species="A" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
71 </listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
72 <listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
73 <speciesReference constant="true" species="B" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
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|
74 </listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
75 </reaction> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
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|
76 <reaction fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="reac3_upper_bound" id="reac3" name="reac3" reversible="false"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
77 <listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
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|
78 <speciesReference constant="true" species="A" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
79 </listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
80 <listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
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|
81 <speciesReference constant="true" species="C" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
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|
82 </listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
83 </reaction> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
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|
84 <reaction fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="reac4_upper_bound" id="reac4" name="reac4" reversible="false"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
85 <listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
86 <speciesReference constant="true" species="B" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
87 <speciesReference constant="true" species="C" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
88 </listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
89 <listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
90 <speciesReference constant="true" species="D" stoichiometry="1.5"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
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|
91 </listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
92 </reaction> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
93 <reaction fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="reac5_upper_bound" id="reac5" name="reac5" reversible="false"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
94 <listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
95 <speciesReference constant="true" species="D" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
96 </listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
97 <listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
98 <speciesReference constant="true" species="D_ext" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
99 </listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
100 </reaction> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
101 <reaction fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="reac6_upper_bound" id="reac6" name="reac6" reversible="false"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
102 <listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
103 <speciesReference constant="true" species="E_ext" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
104 </listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
105 <listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
106 <speciesReference constant="true" species="E" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
107 </listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
108 </reaction> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
109 <reaction fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="reac7_upper_bound" id="reac7" name="reac7" reversible="false"> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
110 <listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
111 <speciesReference constant="true" species="E" stoichiometry="2.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
112 </listOfReactants> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
113 <listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
114 <speciesReference constant="true" species="D" stoichiometry="1.0"/> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
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|
115 </listOfProducts> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
116 </reaction> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
117 </listOfReactions> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
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|
118 </model> |
3cdcfdae8bd2
"planemo upload for repository https://forgemia.inra.fr/metexplore/met4j-galaxy commit a58b6f8a6dde6ef64da64ee50395dc5bc848167a-dirty"
lcottret
parents:
diff
changeset
|
119 </sbml> |